View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_high_109 (Length: 312)
Name: NF3918_high_109
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_high_109 |
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Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 16146295 - 16146587
Alignment:
| Q |
1 |
atacaggtagaaggtgaatgcacaaaaattgttggtagctgtgcaagacaagattgttctgaacactgtaattcctttgcaagaggcgttcgtgttttag |
100 |
Q |
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| T |
16146295 |
atacaggtagaaggtgaatgcacaaaaattgttggtagctgtgcaagacaagattgttctgaacactgtaattcctttgcaagaggcgttcgtgttttag |
16146394 |
T |
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| Q |
101 |
gatcgtcatgttcatactataacttatgcacttgtacttatgatcagccaccacctggattgacatcacctggtaactgtggtattgggatgggaatttg |
200 |
Q |
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| T |
16146395 |
gatcgtcatgttcattctataacttatgcacttgtacttatgatcagccaccacctggattgacaccacctggtaactgtggtattgggatgggaatttg |
16146494 |
T |
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| Q |
201 |
cactggtgactgtcaagatgattgttgcaacaaaaggtgtgttagtcgatatagtaaaacgggtgttgggaagtgtgtcgatgcccttgatat |
293 |
Q |
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| T |
16146495 |
cactggtgactgtcaagatgattgttgcaacaaaaggtgtgttagtagatatagtaaaacgggtgttgggaagtgtgttgatgcccttgatat |
16146587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 16176648 - 16176932
Alignment:
| Q |
1 |
atacaggtagaaggtgaatgcacaaaaattgttggtagctgtgcaagacaagattgttctgaacactgtaattcctttgcaagaggcgttcgtgttttag |
100 |
Q |
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| T |
16176648 |
atacaggtagaaggtgaatgcacaaaaattgttggtagttgtgcaaaagaagattgtgcaactcattgtcaatcatatgcaaaaggtgttgctgttttag |
16176747 |
T |
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| Q |
101 |
gatcgtcatgttcatactataacttatgcacttgtacttatgatcagccaccacctggattgacatcacctggtaactgtggtattgggatgggaatttg |
200 |
Q |
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| T |
16176748 |
gatcatcatgttcatactacaacttatgcacttgtacttttgataagccaccaccaggattaacaccacctggtaattgtattattgggatgggaatttg |
16176847 |
T |
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| Q |
201 |
cactggtgactgtcaagatgattgttgcaacaaaaggtgtgttagtcgatatagtaaaacgggtgttgggaagtgtgtcgatgcc |
285 |
Q |
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| T |
16176848 |
caatggtgactgtcaagatgaatgttgcaacaaaaggtgtgttagtcgatatagtaaaacgggttctgggaattgtgtcgatgcc |
16176932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 16154927 - 16155199
Alignment:
| Q |
1 |
atacaggtagaaggtgaatgcacaaaaattgttggtagctgtgcaagacaagattgttctgaacactgtaattcctttgcaagaggcgttcgtgttttag |
100 |
Q |
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| T |
16154927 |
atacaggtagaaggtgaatgcacaataattgttggtagttgtgcaaaaatagattgtgcaactcattgtcaagcatatggaaaaggtgttgctgttttag |
16155026 |
T |
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| Q |
101 |
gatcgtcatgttcatactataacttatgcacttgtacttatgatcagccaccacctggattgacatcacc---tggtaactgtggtattgggatgggaat |
197 |
Q |
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| T |
16155027 |
gatcctcatgttcattctacaacttatgcacttgtagttatgatcagccaccaccagcattatcatcaccaactggtcattgtgatattgggatgggaat |
16155126 |
T |
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| Q |
198 |
ttgcactggtgactgtcaagatgattgttgcaacaaaaggtgtgttagtcgatatagtaaaacgggtgttggg |
270 |
Q |
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| T |
16155127 |
ttgcactgatgactgtctaagtgattgttgcaacaaaaagtgtgttagtagatatagtaaaacaggtgctggg |
16155199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 139
Target Start/End: Original strand, 16200350 - 16200399
Alignment:
| Q |
90 |
tcgtgttttaggatcgtcatgttcatactataacttatgcacttgtactt |
139 |
Q |
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| T |
16200350 |
tcgtgttttaggatcgtcatgtgcaatttacaacttatgcacttgtactt |
16200399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 145
Target Start/End: Original strand, 16271179 - 16271231
Alignment:
| Q |
93 |
tgttttaggatcgtcatgttcatactataacttatgcacttgtacttatgatc |
145 |
Q |
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| T |
16271179 |
tgttttaggatcttcatgttcattctacaacttatgcacctgtgcttttgatc |
16271231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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