View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_high_114 (Length: 304)
Name: NF3918_high_114
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_high_114 |
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Alignment Details
Target: chr3 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 29298465 - 29298599
Alignment:
| Q |
18 |
attgataaagtaataaaaggaacagaaaatagaagtctaaattactattcttactcttgtattcattcaatatatccatgataaatattttatacaatgt |
117 |
Q |
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| T |
29298465 |
attgataaagtaataaaaggaacagaaaatagaagtctaaattactattcttactcttgtattcattcaatatatccatgataaatattttatacaatgt |
29298564 |
T |
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| Q |
118 |
attcataaaagttatcagtttgcatatgcttaggt |
152 |
Q |
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| T |
29298565 |
attcataaaagttatcagtttgcatatgcttaggt |
29298599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 149 - 290
Target Start/End: Original strand, 29298636 - 29298777
Alignment:
| Q |
149 |
aggtgtaattacactgtaggtgcttgnnnnnnnttagaaattaatctaattgtagactaaaatcgagcataaaaggaacttatggaaccaatgtcctggt |
248 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29298636 |
aggtgtaattacactgtaggtgcttgaaaaaaattagaaattaatctaattgtagactaaaatcgagcataaaaggaacttatggaaccaatgtcctggt |
29298735 |
T |
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| Q |
249 |
cctatatattccagtcctgctttgggatcatgaaagaataat |
290 |
Q |
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| T |
29298736 |
cctatatattcctgtcctgctttgggatcatgaaagaataat |
29298777 |
T |
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