View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3918_high_125 (Length: 288)

Name: NF3918_high_125
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3918_high_125
NF3918_high_125
[»] chr4 (16 HSPs)
chr4 (51-273)||(4734268-4734490)
chr4 (51-183)||(4731445-4731579)
chr4 (175-273)||(4730495-4730595)
chr4 (63-127)||(4739852-4739916)
chr4 (1-47)||(12356247-12356293)
chr4 (211-247)||(4744337-4744373)
chr4 (1-47)||(4089145-4089191)
chr4 (1-47)||(4268959-4269005)
chr4 (1-47)||(15186246-15186292)
chr4 (1-47)||(18068016-18068062)
chr4 (9-47)||(22225891-22225929)
chr4 (2-60)||(46688348-46688406)
chr4 (1-47)||(54897311-54897357)
chr4 (2-47)||(54054551-54054596)
chr4 (175-244)||(4751112-4751182)
chr4 (1-53)||(32217042-32217094)
[»] scaffold0188 (1 HSPs)
scaffold0188 (1-47)||(6247-6293)
[»] chr8 (13 HSPs)
chr8 (1-47)||(20831690-20831736)
chr8 (1-53)||(12652627-12652679)
chr8 (1-61)||(30675709-30675769)
chr8 (1-56)||(16394198-16394253)
chr8 (1-52)||(34228680-34228731)
chr8 (1-55)||(2805397-2805451)
chr8 (1-50)||(13643012-13643061)
chr8 (1-50)||(13743437-13743486)
chr8 (1-52)||(37373204-37373254)
chr8 (1-47)||(27988636-27988682)
chr8 (1-47)||(28045938-28045984)
chr8 (1-50)||(10618018-10618067)
chr8 (9-53)||(39751617-39751661)
[»] chr5 (6 HSPs)
chr5 (1-47)||(35132525-35132571)
chr5 (1-53)||(10069966-10070018)
chr5 (1-47)||(35504377-35504423)
chr5 (1-47)||(10054489-10054535)
chr5 (1-47)||(13470154-13470200)
chr5 (1-47)||(13661811-13661857)
[»] chr1 (11 HSPs)
chr1 (1-50)||(43286722-43286771)
chr1 (1-47)||(51065885-51065931)
chr1 (1-50)||(12072199-12072248)
chr1 (1-52)||(17333419-17333469)
chr1 (1-52)||(24178600-24178651)
chr1 (9-56)||(38595898-38595945)
chr1 (1-47)||(15227742-15227788)
chr1 (1-47)||(29657774-29657820)
chr1 (3-60)||(5694311-5694368)
chr1 (1-53)||(28481841-28481893)
chr1 (1-49)||(48383248-48383296)
[»] chr3 (8 HSPs)
chr3 (1-61)||(39074408-39074468)
chr3 (1-53)||(48725268-48725320)
chr3 (1-47)||(272223-272269)
chr3 (1-47)||(46352637-46352683)
chr3 (1-47)||(49893334-49893380)
chr3 (1-42)||(50395699-50395740)
chr3 (1-47)||(52520684-52520730)
chr3 (2-54)||(28139305-28139357)
[»] scaffold0038 (1 HSPs)
scaffold0038 (1-60)||(25709-25768)
[»] chr6 (9 HSPs)
chr6 (1-60)||(28225211-28225270)
chr6 (1-53)||(392093-392145)
chr6 (1-47)||(2350655-2350701)
chr6 (1-47)||(7851296-7851342)
chr6 (1-47)||(20897951-20897997)
chr6 (1-47)||(27433495-27433541)
chr6 (1-47)||(34396664-34396710)
chr6 (1-41)||(18276752-18276791)
chr6 (2-54)||(35043886-35043938)
[»] chr2 (9 HSPs)
chr2 (1-47)||(561655-561701)
chr2 (1-47)||(20552934-20552980)
chr2 (1-47)||(26891800-26891846)
chr2 (1-47)||(30486213-30486259)
chr2 (1-47)||(31438649-31438695)
chr2 (1-47)||(32361006-32361052)
chr2 (1-47)||(38591011-38591057)
chr2 (1-54)||(4381791-4381844)
chr2 (1-53)||(3668250-3668301)
[»] chr7 (7 HSPs)
chr7 (2-56)||(8754723-8754777)
chr7 (1-47)||(4628569-4628615)
chr7 (1-47)||(28587913-28587958)
chr7 (1-47)||(34333287-34333333)
chr7 (2-47)||(1736983-1737028)
chr7 (1-50)||(28262031-28262080)
chr7 (1-53)||(43594173-43594225)
[»] scaffold0264 (1 HSPs)
scaffold0264 (1-47)||(22964-23010)
[»] scaffold0003 (1 HSPs)
scaffold0003 (1-47)||(53822-53868)
[»] scaffold0021 (1 HSPs)
scaffold0021 (1-50)||(116204-116253)
[»] scaffold0014 (1 HSPs)
scaffold0014 (2-47)||(68428-68473)


Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 51 - 273
Target Start/End: Complemental strand, 4734490 - 4734268
Alignment:
Q  51 atataataatagtaaattcttcttccctaattttttgtttgaaatgtaaatgtcgatgatagtaattatactagttaattttatttccttttaaacataa 150  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4734490 atataataatagtaaattcttcttccctaattttttctttgaaatgtaaatgtcgatgatagtaattatactagttaattttatttccttttaaacataa 4734391  T
Q  151 agttttatgtgcacgacatatcagtttattttataacgttgttacgtttatgacttgtctcactttaatttaaataatgttgtcctttgaacttcctaag 250  Q
    | |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||     
T  4734390 aattttatgtgcacgacatatcagtttattttataatgttgttacgtttatgatttgtctcactttaatttaaataatgttgtcctttgaacttcctaac 4734291  T
Q  251 aagacatataaggtattacttat 273  Q
    |||||||||||||||||||||||    
T  4734290 aagacatataaggtattacttat 4734268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 51 - 183
Target Start/End: Complemental strand, 4731579 - 4731445
Alignment:
Q  51 atataataatagtaaattcttcttccctaattttttgtttgaaatgtaaatgtcgatgatagtaattatactagttaattttatttccttttaaacataa 150  Q
    ||||||||||| |||||| ||| |||| ||| ||||||||||||||||||||||||||||||||||| || | |||||||||||||| ||||||||||||    
T  4731579 atataataatattaaatttttcgtccccaatattttgtttgaaatgtaaatgtcgatgatagtaattgtaattgttaattttatttctttttaaacataa 4731480  T
Q  151 agttttatgtgcacgacatatca--gtttatttta 183  Q
    |  ||||| |||| | |||||||  ||||||||||    
T  4731479 aactttatttgcatggcatatcaatgtttatttta 4731445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 175 - 273
Target Start/End: Complemental strand, 4730595 - 4730495
Alignment:
Q  175 tttattttataacgttgttacgtttatgacttgtctcac--tttaatttaaataatgttgtcctttgaacttcctaagaagacatataaggtattactta 272  Q
    |||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||| | |  ||||||||||| ||||||    
T  4730595 tttattttataatgttgttacgtttatgacttgtctcacactttaatttaaataatgttgtcctttgaacttcctaggcatgcatataaggtaatactta 4730496  T
Q  273 t 273  Q
    |    
T  4730495 t 4730495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 63 - 127
Target Start/End: Complemental strand, 4739916 - 4739852
Alignment:
Q  63 taaattcttcttccctaattttttgtttgaaatgtaaatgtcgatgatagtaattatactagtta 127  Q
    |||||||||||| || ||| |||||| |||||||||| ||| |||||||||||||||| ||||||    
T  4739916 taaattcttctttcccaatattttgtctgaaatgtaattgtggatgatagtaattataatagtta 4739852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 12356293 - 12356247
Alignment:
Q  1 ctttttcatatccttaaccagtgtcccaggggcaccggttagtattt 47  Q
    |||||||||||||||||||||| || |||||||||||||||| ||||    
T  12356293 ctttttcatatccttaaccagtatctcaggggcaccggttagcattt 12356247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 247
Target Start/End: Complemental strand, 4744373 - 4744337
Alignment:
Q  211 cactttaatttaaataatgttgtcctttgaacttcct 247  Q
    ||||||| |||||||||||||||||||||||||||||    
T  4744373 cactttagtttaaataatgttgtcctttgaacttcct 4744337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 4089191 - 4089145
Alignment:
Q  1 ctttttcatatccttaaccagtgtcccaggggcaccggttagtattt 47  Q
    |||||||||| |||||| ||||| |||||||||||||||||| ||||    
T  4089191 ctttttcatacccttaatcagtgccccaggggcaccggttagcattt 4089145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 4268959 - 4269005
Alignment:
Q  1 ctttttcatatccttaaccagtgtcccaggggcaccggttagtattt 47  Q
    |||||||||| |||||||||||| ||| |||||||||||||| ||||    
T  4268959 ctttttcatacccttaaccagtgccccgggggcaccggttagcattt 4269005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 15186292 - 15186246
Alignment:
Q  1 ctttttcatatccttaaccagtgtcccaggggcaccggttagtattt 47  Q
    |||||||||| |||||||||||| ||| |||||||||||||| ||||    
T  15186292 ctttttcatacccttaaccagtgccccgggggcaccggttagcattt 15186246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 18068016 - 18068062
Alignment:
Q  1 ctttttcatatccttaaccagtgtcccaggggcaccggttagtattt 47  Q
    |||||||||| |||||||||||| ||| |||||||||||||| ||||    
T  18068016 ctttttcatacccttaaccagtgccccgggggcaccggttagcattt 18068062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 47
Target Start/End: Original strand, 22225891 - 22225929
Alignment:
Q  9 tatccttaaccagtgtcccaggggcaccggttagtattt 47  Q
    ||||||||||||||||||| |||||||||||||| ||||    
T  22225891 tatccttaaccagtgtcccgggggcaccggttagcattt 22225929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 46688348 - 46688406
Alignment:
Q  2 tttttcatatccttaaccagtgtcccaggggcaccggttagtattttccatataataat 60  Q
    |||||||||||||||||||||| | | |||||||| ||||| |||| || |||||||||    
T  46688348 tttttcatatccttaaccagtgcctcgggggcaccagttagcatttcccttataataat 46688406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 54897357 - 54897311
Alignment:
Q  1 ctttttcatatccttaaccagtgtcccaggggcaccggttagtattt 47  Q
    |||| |||||||||||||||||| ||| |||||||||||||| ||||    
T  54897357 ctttctcatatccttaaccagtgccccgggggcaccggttagcattt 54897311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 54054596 - 54054551
Alignment:
Q  2 tttttcatatccttaaccagtgtcccaggggcaccggttagtattt 47  Q
    |||||||||||||||||| ||| ||| |||||||||||||| ||||    
T  54054596 tttttcatatccttaaccggtgcccccggggcaccggttagcattt 54054551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 244
Target Start/End: Complemental strand, 4751182 - 4751112
Alignment:
Q  175 tttattttataacgttgttacgtttatgac--ttgtctcactttaatttaaataatgttgtcctttgaactt 244  Q
    |||||||||||| ||| |||||||||||||  ||  | |||||||||||||||||| ||||||||| |||||    
T  4751182 tttattttataatgttattacgtttatgaccattcgcacactttaatttaaataat-ttgtcctttaaactt 4751112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 32217094 - 32217042
Alignment:
Q  1 ctttttcatatccttaaccagtgtcccaggggcaccggttagtattttccata 53  Q
    |||||| |||||||||||||||| ||| |||||||| ||||| |||| |||||    
T  32217094 cttttttatatccttaaccagtgccccgggggcaccagttagcatttcccata 32217042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 6247 - 6293
Alignment:
Q  1 ctttttcatatccttaaccagtgtcccaggggcaccggttagtattt 47  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||||    
T  6247 ctttttcatatccttaaccagtgccccaggggcaccggttagcattt 6293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 20831690 - 20831736
Alignment:
Q  1 ctttttcatatccttaaccagtgtcccaggggcaccggttagtattt 47  Q
    ||||||||||||||||||||||||||| |||||||||||||| ||||    
T  20831690 ctttttcatatccttaaccagtgtcccgggggcaccggttagcattt 20831736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 12652679 - 12652627
Alignment:
Q  1 ctttttcatatccttaaccagtgtcccaggggcaccggttagtattttccata 53  Q
    |||||||||||||||||||||||  ||||||||||||||||| |||| |||||    
T  12652679 ctttttcatatccttaaccagtgctccaggggcaccggttagcatttcccata 12652627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 30675709 - 30675769
Alignment:
Q  1 ctttttcatatccttaaccagtgtcccaggggcaccggttagtattttccatataataata 61  Q
    |||||||||| |||||||||||| ||| |||||||||||||| |||| ||||| |||||||    
T  30675709 ctttttcatacccttaaccagtgccccgggggcaccggttagcatttcccataaaataata 30675769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 16394198 - 16394253
Alignment:
Q  1 ctttttcatatccttaaccagtgtcccaggggcaccggttagtattttccatataa 56  Q
    |||||||| |||||||||||||| ||| |||||||||||||| |||| ||||||||    
T  16394198 ctttttcacatccttaaccagtgccccgggggcaccggttagcatttcccatataa 16394253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 34228731 - 34228680
Alignment:
Q  1 ctttttcatatccttaaccagtgtcccaggggcaccggttagtattttccat 52  Q
    ||||||||||||||||||||||| ||| |||||||||||||| |||| ||||    
T  34228731 ctttttcatatccttaaccagtgcccccggggcaccggttagcatttcccat 34228680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 2805397 - 2805451
Alignment:
Q  1 ctttttcatatccttaaccagtgtcccaggggcaccggttagtattttccatata 55  Q
    ||||||||||||||||||||||||||| ||||||| |||||  |||| |||||||    
T  2805397 ctttttcatatccttaaccagtgtcccgggggcactggttaacatttcccatata 2805451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 13643061 - 13643012
Alignment:
Q  1 ctttttcatatccttaaccagtgtcccaggggcaccggttagtattttcc 50  Q
    ||||||| ||||||||||||||| ||| |||||||||||||| |||||||    
T  13643061 ctttttcgtatccttaaccagtgccccgggggcaccggttagcattttcc 13643012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 13743486 - 13743437
Alignment:
Q  1 ctttttcatatccttaaccagtgtcccaggggcaccggttagtattttcc 50  Q
    ||||||| ||||||||||||||| ||| |||||||||||||| |||||||    
T  13743486 ctttttcgtatccttaaccagtgccccgggggcaccggttagcattttcc 13743437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 37373254 - 37373204
Alignment:
Q  1 ctttttcatatccttaaccagtgtcccaggggcaccggttagtattttccat 52  Q
    |||||||||||||||||||||||| || |||||||||||||| |||| ||||    
T  37373254 ctttttcatatccttaaccagtgt-ccgggggcaccggttagcatttcccat 37373204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 27988636 - 27988682
Alignment:
Q  1 ctttttcatatccttaaccagtgtcccaggggcaccggttagtattt 47  Q
    ||||||||||||||||||||||| ||| | |||||||||||| ||||    
T  27988636 ctttttcatatccttaaccagtgccccggaggcaccggttagcattt 27988682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 28045938 - 28045984
Alignment:
Q  1 ctttttcatatccttaaccagtgtcccaggggcaccggttagtattt 47  Q
    ||||||||||||||||||||||| ||| | |||||||||||| ||||    
T  28045938 ctttttcatatccttaaccagtgccccggaggcaccggttagcattt 28045984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 10618067 - 10618018
Alignment:
Q  1 ctttttcatatccttaaccagtgtcccaggggcaccggttagtattttcc 50  Q
    ||||||||||||||||||| ||| || || |||||||||||| |||||||    
T  10618067 ctttttcatatccttaacctgtgccctagaggcaccggttagcattttcc 10618018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 39751617 - 39751661
Alignment:
Q  9 tatccttaaccagtgtcccaggggcaccggttagtattttccata 53  Q
    ||||||||||||||| ||| |||||||||||||| |||| |||||    
T  39751617 tatccttaaccagtgccccgggggcaccggttagcatttcccata 39751661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 35132571 - 35132525
Alignment:
Q  1 ctttttcatatccttaaccagtgtcccaggggcaccggttagtattt 47  Q
    ||||||||||||||||||||||||||| |||||||||||||| ||||    
T  35132571 ctttttcatatccttaaccagtgtcccgggggcaccggttagcattt 35132525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 10070018 - 10069966
Alignment:
Q  1 ctttttcatatccttaaccagtgtcccaggggcaccggttagtattttccata 53  Q
    ||||||||||||||||||||||| ||| |||||||||||||| |||| |||||    
T  10070018 ctttttcatatccttaaccagtgccccgggggcaccggttagcatttcccata 10069966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 35504377 - 35504423
Alignment:
Q  1 ctttttcatatccttaaccagtgtcccaggggcaccggttagtattt 47  Q
    |||||||||| |||||||||||||||| |||||||||||||| ||||    
T  35504377 ctttttcatacccttaaccagtgtcccgggggcaccggttagcattt 35504423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 10054489 - 10054535
Alignment:
Q  1 ctttttcatatccttaaccagtgtcccaggggcaccggttagtattt 47  Q
    |||||||||| |||||||||||| ||| |||||||||||||| ||||    
T  10054489 ctttttcatacccttaaccagtgccccgggggcaccggttagcattt 10054535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 13470200 - 13470154
Alignment:
Q  1 ctttttcatatccttaaccagtgtcccaggggcaccggttagtattt 47  Q
    ||||||||||||||||||||||| ||||  |||||||||||| ||||    
T  13470200 ctttttcatatccttaaccagtgccccataggcaccggttagcattt 13470154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 13661857 - 13661811
Alignment:
Q  1 ctttttcatatccttaaccagtgtcccaggggcaccggttagtattt 47  Q
    |||||||||||||||||||||||  || |||||||||||||| ||||    
T  13661857 ctttttcatatccttaaccagtgctccgggggcaccggttagcattt 13661811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 43286771 - 43286722
Alignment:
Q  1 ctttttcatatccttaaccagtgtcccaggggcaccggttagtattttcc 50  Q
    ||||||||||||||||||||||||||||||| || ||||||| |||||||    
T  43286771 ctttttcatatccttaaccagtgtcccagggacatcggttagcattttcc 43286722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 51065885 - 51065931
Alignment:
Q  1 ctttttcatatccttaaccagtgtcccaggggcaccggttagtattt 47  Q
    ||||||||||||||||||||||||||| ||| |||||||||| ||||    
T  51065885 ctttttcatatccttaaccagtgtcccggggacaccggttagcattt 51065931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 12072199 - 12072248
Alignment:
Q  1 ctttttcatatccttaaccagtgtcccaggggcaccggttagtattttcc 50  Q
    ||||||||||||||||||| ||| ||| |||||||||||||| |||||||    
T  12072199 ctttttcatatccttaaccggtgccccgggggcaccggttagcattttcc 12072248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 17333419 - 17333469
Alignment:
Q  1 ctttttcatatccttaaccagtgtcccaggggcaccggttagtattttccat 52  Q
    ||||||||||||||||||||||| ||| |||||||||||||| |||| ||||    
T  17333419 ctttttcatatccttaaccagtg-cccgggggcaccggttagcatttcccat 17333469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 24178600 - 24178651
Alignment:
Q  1 ctttttcatatccttaaccagtgtcccaggggcaccggttagtattttccat 52  Q
    ||||||||||||||||||||||| ||| |||||| ||||||| |||| ||||    
T  24178600 ctttttcatatccttaaccagtgccccgggggcatcggttagcatttcccat 24178651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 56
Target Start/End: Original strand, 38595898 - 38595945
Alignment:
Q  9 tatccttaaccagtgtcccaggggcaccggttagtattttccatataa 56  Q
    ||||||||||||||| ||| |||||||||||||| |||| ||||||||    
T  38595898 tatccttaaccagtgccccgggggcaccggttagcatttcccatataa 38595945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 15227788 - 15227742
Alignment:
Q  1 ctttttcatatccttaaccagtgtcccaggggcaccggttagtattt 47  Q
    ||||||||||||||||||||||| ||| |||| ||||||||| ||||    
T  15227788 ctttttcatatccttaaccagtgcccccggggtaccggttagcattt 15227742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 29657820 - 29657774
Alignment:
Q  1 ctttttcatatccttaaccagtgtcccaggggcaccggttagtattt 47  Q
    |||||| |||||||||||||||| ||| |||||||||||||| ||||    
T  29657820 cttttttatatccttaaccagtgccccgggggcaccggttagcattt 29657774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 5694368 - 5694311
Alignment:
Q  3 ttttcatatccttaaccagtgtcccaggggcaccggttagtattttccatataataat 60  Q
    |||| |||||||||||||||| ||| | |||||||||||| |||| ||||| ||||||    
T  5694368 tttttatatccttaaccagtgccccggaggcaccggttagcatttcccataaaataat 5694311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 28481893 - 28481841
Alignment:
Q  1 ctttttcatatccttaaccagtgtcccaggggcaccggttagtattttccata 53  Q
    ||||||||||||||||||||| | || || |||||||||||| |||| |||||    
T  28481893 ctttttcatatccttaaccagggcccaagaggcaccggttagcatttcccata 28481841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 48383248 - 48383296
Alignment:
Q  1 ctttttcatatccttaaccagtgtcccaggggcaccggttagtattttc 49  Q
    |||||||| |||||||||||||| ||| || ||||||||||| ||||||    
T  48383248 ctttttcacatccttaaccagtgccccgggagcaccggttagcattttc 48383296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 39074468 - 39074408
Alignment:
Q  1 ctttttcatatccttaaccagtgtcccaggggcaccggttagtattttccatataataata 61  Q
    |||||||||| |||||||||||| ||| |||||||||||||| |||| |||||| ||||||    
T  39074468 ctttttcatacccttaaccagtgccccgggggcaccggttagcatttcccatattataata 39074408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 48725320 - 48725268
Alignment:
Q  1 ctttttcatatccttaaccagtgtcccaggggcaccggttagtattttccata 53  Q
    ||||||||||||||||||||||| ||| |||||||||||||| |||| |||||    
T  48725320 ctttttcatatccttaaccagtgcccccggggcaccggttagcatttcccata 48725268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 272269 - 272223
Alignment:
Q  1 ctttttcatatccttaaccagtgtcccaggggcaccggttagtattt 47  Q
    ||||||||||||||||||||||| ||| |||||||||||||| ||||    
T  272269 ctttttcatatccttaaccagtgccccgggggcaccggttagcattt 272223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 46352683 - 46352637
Alignment:
Q  1 ctttttcatatccttaaccagtgtcccaggggcaccggttagtattt 47  Q
    ||||||||||||||||||||||| ||| |||||||||||||| ||||    
T  46352683 ctttttcatatccttaaccagtgccccgggggcaccggttagcattt 46352637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 49893380 - 49893334
Alignment:
Q  1 ctttttcatatccttaaccagtgtcccaggggcaccggttagtattt 47  Q
    ||||||||||||||||||||||| ||| |||||||||||||| ||||    
T  49893380 ctttttcatatccttaaccagtgccccgggggcaccggttagcattt 49893334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 50395699 - 50395740
Alignment:
Q  1 ctttttcatatccttaaccagtgtcccaggggcaccggttag 42  Q
    ||||||||||||| ||||||||||||| ||||||||||||||    
T  50395699 ctttttcatatccctaaccagtgtcccgggggcaccggttag 50395740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 52520730 - 52520684
Alignment:
Q  1 ctttttcatatccttaaccagtgtcccaggggcaccggttagtattt 47  Q
    |||||||||| |||||||||||| ||| |||||||||||||| ||||    
T  52520730 ctttttcatacccttaaccagtgccccgggggcaccggttagcattt 52520684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 28139357 - 28139305
Alignment:
Q  2 tttttcatatccttaaccagtgtcccaggggcaccggttagtattttccatat 54  Q
    ||||||||||||||||||||||||   |||||||| ||||| |||| ||||||    
T  28139357 tttttcatatccttaaccagtgtcttgggggcaccagttagcatttcccatat 28139305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 25768 - 25709
Alignment:
Q  1 ctttttcatatccttaaccagtgtcccaggggcaccggttagtattttccatataataat 60  Q
    ||||||||||||||||||| || |||||| |||||| ||||| |||| ||||||||||||    
T  25768 ctttttcatatccttaacccgtatcccagaggcaccagttagcatttcccatataataat 25709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 28225270 - 28225211
Alignment:
Q  1 ctttttcatatccttaaccagtgtcccaggggcaccggttagtattttccatataataat 60  Q
    ||||||||||||||||||| || |||||| |||||| ||||| |||| ||||||||||||    
T  28225270 ctttttcatatccttaacccgtatcccagaggcaccagttagcatttcccatataataat 28225211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 392145 - 392093
Alignment:
Q  1 ctttttcatatccttaaccagtgtcccaggggcaccggttagtattttccata 53  Q
    |||||||||| |||||||||||| ||| |||||||||||||| |||| |||||    
T  392145 ctttttcatacccttaaccagtgccccgggggcaccggttagcatttcccata 392093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 2350701 - 2350655
Alignment:
Q  1 ctttttcatatccttaaccagtgtcccaggggcaccggttagtattt 47  Q
    ||||||||||||||||||||||| ||| || ||||||||||| ||||    
T  2350701 ctttttcatatccttaaccagtgccccgggagcaccggttagcattt 2350655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 7851296 - 7851342
Alignment:
Q  1 ctttttcatatccttaaccagtgtcccaggggcaccggttagtattt 47  Q
    ||||||||||||||||||||||| ||  |||||||||||||| ||||    
T  7851296 ctttttcatatccttaaccagtgccctgggggcaccggttagcattt 7851342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 20897997 - 20897951
Alignment:
Q  1 ctttttcatatccttaaccagtgtcccaggggcaccggttagtattt 47  Q
    ||||||||||||||||||||||| ||  |||||||||||||| ||||    
T  20897997 ctttttcatatccttaaccagtgccctgggggcaccggttagcattt 20897951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 27433541 - 27433495
Alignment:
Q  1 ctttttcatatccttaaccagtgtcccaggggcaccggttagtattt 47  Q
    |||||||||| |||||||||||| ||| |||||||||||||| ||||    
T  27433541 ctttttcatacccttaaccagtgccccgggggcaccggttagcattt 27433495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 34396664 - 34396710
Alignment:
Q  1 ctttttcatatccttaaccagtgtcccaggggcaccggttagtattt 47  Q
    ||||||||||||||||||| ||||||  |||||||||||||| ||||    
T  34396664 ctttttcatatccttaacctgtgtcctgggggcaccggttagcattt 34396710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 18276752 - 18276791
Alignment:
Q  1 ctttttcatatccttaaccagtgtcccaggggcaccggtta 41  Q
    ||||||||||||||||||||||| |||||||||||| ||||    
T  18276752 ctttttcatatccttaaccagtg-cccaggggcaccagtta 18276791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 35043938 - 35043886
Alignment:
Q  2 tttttcatatccttaaccagtgtcccaggggcaccggttagtattttccatat 54  Q
    ||||||||||||||||||||||||||  || |||| ||||| |||| ||||||    
T  35043938 tttttcatatccttaaccagtgtcccgtggacaccagttagcatttcccatat 35043886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 561655 - 561701
Alignment:
Q  1 ctttttcatatccttaaccagtgtcccaggggcaccggttagtattt 47  Q
    ||||||||||||||||||||||| ||| |||||||||||||| ||||    
T  561655 ctttttcatatccttaaccagtgccccgggggcaccggttagcattt 561701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 20552980 - 20552934
Alignment:
Q  1 ctttttcatatccttaaccagtgtcccaggggcaccggttagtattt 47  Q
    ||||||||||||||||||||||| ||| |||||||||||||| ||||    
T  20552980 ctttttcatatccttaaccagtgcccccggggcaccggttagcattt 20552934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 26891800 - 26891846
Alignment:
Q  1 ctttttcatatccttaaccagtgtcccaggggcaccggttagtattt 47  Q
    |||||| |||||||||| ||||||||| |||||||||||||| ||||    
T  26891800 cttttttatatccttaatcagtgtcccgggggcaccggttagcattt 26891846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 30486259 - 30486213
Alignment:
Q  1 ctttttcatatccttaaccagtgtcccaggggcaccggttagtattt 47  Q
    ||||||||||||||||||||||| ||| |||||||| ||||| ||||    
T  30486259 ctttttcatatccttaaccagtgccccgggggcaccagttagcattt 30486213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 31438695 - 31438649
Alignment:
Q  1 ctttttcatatccttaaccagtgtcccaggggcaccggttagtattt 47  Q
    ||||||||||||||||||||||| ||| || ||||||||||| ||||    
T  31438695 ctttttcatatccttaaccagtgccccgggagcaccggttagcattt 31438649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 32361006 - 32361052
Alignment:
Q  1 ctttttcatatccttaaccagtgtcccaggggcaccggttagtattt 47  Q
    |||||||| |||||||||||||| ||| |||||||||||||| ||||    
T  32361006 ctttttcacatccttaaccagtgccccgggggcaccggttagcattt 32361052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 38591011 - 38591057
Alignment:
Q  1 ctttttcatatccttaaccagtgtcccaggggcaccggttagtattt 47  Q
    ||||||||||| ||||||||||| ||||||| |||||||||| ||||    
T  38591011 ctttttcatattcttaaccagtgccccagggacaccggttagcattt 38591057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 4381844 - 4381791
Alignment:
Q  1 ctttttcatatccttaaccagtgtcccaggggcaccggttagtattttccatat 54  Q
    |||||||||| ||||||||||||  || |||||||||||||| ||||| |||||    
T  4381844 ctttttcatacccttaaccagtgcaccgggggcaccggttagcatttttcatat 4381791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 3668250 - 3668301
Alignment:
Q  1 ctttttcatatccttaaccagtgtcccaggggcaccggttagtattttccata 53  Q
    ||||| |||| |||||||||||||||  |||||||||||||| ||||||||||    
T  3668250 cttttccatacccttaaccagtgtccg-ggggcaccggttagcattttccata 3668301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 56
Target Start/End: Original strand, 8754723 - 8754777
Alignment:
Q  2 tttttcatatccttaaccagtg-tcccaggggcaccggttagtattttccatataa 56  Q
    |||||||||||||||||||||| ||||| ||||||||||||| |||| ||||||||    
T  8754723 tttttcatatccttaaccagtgctccca-gggcaccggttagcatttcccatataa 8754777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 4628615 - 4628569
Alignment:
Q  1 ctttttcatatccttaaccagtgtcccaggggcaccggttagtattt 47  Q
    ||||||||||||||||||| ||| |||||||||| ||||||| ||||    
T  4628615 ctttttcatatccttaaccggtgccccaggggcatcggttagcattt 4628569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 28587958 - 28587913
Alignment:
Q  1 ctttttcatatccttaaccagtgtcccaggggcaccggttagtattt 47  Q
    |||||||||||||||||||||||| || |||||||||||||| ||||    
T  28587958 ctttttcatatccttaaccagtgt-ccgggggcaccggttagcattt 28587913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 34333333 - 34333287
Alignment:
Q  1 ctttttcatatccttaaccagtgtcccaggggcaccggttagtattt 47  Q
    |||||||||| |||||||||||| ||| |||||||||||||| ||||    
T  34333333 ctttttcatacccttaaccagtgccccgggggcaccggttagcattt 34333287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 1737028 - 1736983
Alignment:
Q  2 tttttcatatccttaaccagtgtcccaggggcaccggttagtattt 47  Q
    |||||||||||||||||||||| |||||  ||||||||||| ||||    
T  1737028 tttttcatatccttaaccagtgccccagaagcaccggttagcattt 1736983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 28262080 - 28262031
Alignment:
Q  1 ctttttcatatccttaaccagtgtcccaggggcaccggttagtattttcc 50  Q
    ||||||||||||||||||| ||| ||| | |||||||||||| |||||||    
T  28262080 ctttttcatatccttaaccggtgacccggaggcaccggttagcattttcc 28262031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 43594173 - 43594225
Alignment:
Q  1 ctttttcatatccttaaccagtgtcccaggggcaccggttagtattttccata 53  Q
    |||||| ||||||||||||||||| || ||| |||||||||| |||| |||||    
T  43594173 cttttttatatccttaaccagtgttccggggacaccggttagcatttcccata 43594225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 23010 - 22964
Alignment:
Q  1 ctttttcatatccttaaccagtgtcccaggggcaccggttagtattt 47  Q
    |||||||||||||||||||||||  || |||||||||||||| ||||    
T  23010 ctttttcatatccttaaccagtgctccgggggcaccggttagcattt 22964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 53822 - 53868
Alignment:
Q  1 ctttttcatatccttaaccagtgtcccaggggcaccggttagtattt 47  Q
    |||||||||| |||||||||||| ||| |||||||||||||| ||||    
T  53822 ctttttcatacccttaaccagtgccccgggggcaccggttagcattt 53868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 116253 - 116204
Alignment:
Q  1 ctttttcatatccttaaccagtgtcccaggggcaccggttagtattttcc 50  Q
    |||||||||||| |||||| ||| ||| |||||||||||||| |||||||    
T  116253 ctttttcatatctttaacctgtgccccgggggcaccggttagcattttcc 116204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 68428 - 68473
Alignment:
Q  2 tttttcatatccttaaccagtgtcccaggggcaccggttagtattt 47  Q
    |||||||||||||||||||||| ||| |||||||| ||||| ||||    
T  68428 tttttcatatccttaaccagtgccccgggggcaccagttagcattt 68473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University