View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_high_132 (Length: 276)
Name: NF3918_high_132
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_high_132 |
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Alignment Details
Target: chr1 (Bit Score: 145; Significance: 2e-76; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 2 - 210
Target Start/End: Original strand, 9579532 - 9579733
Alignment:
| Q |
2 |
tttctcgcctgccaaatgctccacatactcgcgaaccaaatggcttcaagtccctgaaaggcatctttcgtcacgcgaaccagccctgtaaaggtaataa |
101 |
Q |
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| T |
9579532 |
tttctcgccttccaaatgctccacatactcgtgaaccaaatggcttcaagttcctgaactgcatctttcgtcacg--aaccagccctgtaaaggtaataa |
9579629 |
T |
|
| Q |
102 |
agttgatggtacacatattgtgaaacagtaccacctgtactcccagccaatgcgcaattccgaaccatacttttttgatacagtcgggcaagcaaaacat |
201 |
Q |
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|||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
9579630 |
agttgatggtacacat--tgtgaaaca---ccacttgtactcccagccaatgcgcaattccgaaccatacttttttgatacagttgggcaagcaaaacat |
9579724 |
T |
|
| Q |
202 |
aagctgtta |
210 |
Q |
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||||||||| |
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| T |
9579725 |
aagctgtta |
9579733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 2 - 265
Target Start/End: Complemental strand, 32718740 - 32718486
Alignment:
| Q |
2 |
tttctcgcctgccaaatgctccacatactcgcgaaccaaatggcttcaagtccctgaaaggcatctttcgtcacgcgaaccagccctgtaaaggtaataa |
101 |
Q |
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|||||||||| | ||||| ||||||||||||||||||| |||||||| |||||||||| |||||||| || | | |||||||||||||||| ||||||| |
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| T |
32718740 |
tttctcgccttcgaaatgttccacatactcgcgaaccagatggcttccagtccctgaactgcatcttttgttatgggaaccagccctgtaaatgtaataa |
32718641 |
T |
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| Q |
102 |
agttgatggtacacatattgtgaaacagtaccacctgtactcccagccaatgcgcaattccgaaccatacttttttgatacagtcgggcaagcaaaacat |
201 |
Q |
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| T |
32718640 |
agtggatggtactcatattgtgaaac---accacctgtacaccaagccattgcgcaattctgaaccagac--ttttgagacagtcgggcaagcaaaaaat |
32718546 |
T |
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| Q |
202 |
aagctgttagaagtctctatctctccacatcctcctatgtgcaatgtaactcctccctacctat |
265 |
Q |
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||| ||| |||| |||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
32718545 |
aagtggttggaag--tctatctctccacatcctccta--tgcaatgtaactcctccctacctat |
32718486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 106 - 265
Target Start/End: Original strand, 9585159 - 9585312
Alignment:
| Q |
106 |
gatggtacacatattgtgaaacagtaccacctgtactcccagccaatgcgcaattccgaaccatacttttttgatacagtcgggcaagcaaaacataagc |
205 |
Q |
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||||||||||||| ||||||| ||||| ||||||||||||||||||| |||||||||||||||||||| | |||||||||||| |||||| ||||| |
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| T |
9585159 |
gatggtacacataatgtgaaa---taccatctgtactcccagccaatgcacaattccgaaccatacttttct--tacagtcgggcatgcaaaaaataagt |
9585253 |
T |
|
| Q |
206 |
tgttagaagtctctatctctccacatcctcctatgtgcaatgtaactcctccctacctat |
265 |
Q |
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| T |
9585254 |
ggctagaagtatgtgtctctctacatccttctatg-caaatgtaactcttacctacctat |
9585312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 48
Target Start/End: Original strand, 9585070 - 9585116
Alignment:
| Q |
2 |
tttctcgcctgccaaatgctccacatactcgcgaaccaaatggcttc |
48 |
Q |
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|||||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
9585070 |
tttctcgccttcaaaatgctccacatactcgcgaaccaaatggcttc |
9585116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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