View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3918_high_136 (Length: 271)

Name: NF3918_high_136
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3918_high_136
NF3918_high_136
[»] chr5 (3 HSPs)
chr5 (20-260)||(5861075-5861315)
chr5 (219-260)||(11596469-11596510)
chr5 (219-260)||(28296332-28296373)
[»] chr7 (1 HSPs)
chr7 (219-260)||(38134420-38134461)
[»] chr4 (1 HSPs)
chr4 (219-260)||(18513255-18513296)
[»] chr2 (2 HSPs)
chr2 (219-260)||(18570976-18571017)
chr2 (219-255)||(40681986-40682022)
[»] chr6 (1 HSPs)
chr6 (219-255)||(10395452-10395488)


Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 20 - 260
Target Start/End: Complemental strand, 5861315 - 5861075
Alignment:
Q  20 tagttactgttcataaacttacaggaatttctaactcccgattgtagtttaatactgttagatctgttgctgaaaatttatctttgcggttgctacttga 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5861315 tagttactgttcataaacttacaggaatttctaactcccgattgtagtttaatactgttagatctgttgctgaaaatttatctttgcggttgctacttga 5861216  T
Q  120 atttttatagttttgaagtgaaattggactttaatttctagttatgaggtttactttttagctatgaagcatatacacagacaccagacacgtcaaccgc 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5861215 atttttatagttttgaagtgaaattggactttaatttctagttatgaggtttactttttagctatgaagcatatacacagacaccagacacgtcaaccgc 5861116  T
Q  220 cgataataatttgagaaaatggcttaattcaatgtattcat 260  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  5861115 cgataatcatttgagaaaatggcttaattcaatgtattcat 5861075  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 219 - 260
Target Start/End: Complemental strand, 11596510 - 11596469
Alignment:
Q  219 ccgataataatttgagaaaatggcttaattcaatgtattcat 260  Q
    |||||||||||||||||||||| | |||||||||||| ||||    
T  11596510 ccgataataatttgagaaaatgacataattcaatgtaatcat 11596469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 219 - 260
Target Start/End: Original strand, 28296332 - 28296373
Alignment:
Q  219 ccgataataatttgagaaaatggcttaattcaatgtattcat 260  Q
    |||||||||||||||||||||| | |||||||||||| ||||    
T  28296332 ccgataataatttgagaaaatgacataattcaatgtactcat 28296373  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 219 - 260
Target Start/End: Complemental strand, 38134461 - 38134420
Alignment:
Q  219 ccgataataatttgagaaaatggcttaattcaatgtattcat 260  Q
    |||||||||||||||||||||| | |||||||||||| ||||    
T  38134461 ccgataataatttgagaaaatgacataattcaatgtaatcat 38134420  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 219 - 260
Target Start/End: Complemental strand, 18513296 - 18513255
Alignment:
Q  219 ccgataataatttgagaaaatggcttaattcaatgtattcat 260  Q
    |||||||||||||||||||||| | |||||||||||| ||||    
T  18513296 ccgataataatttgagaaaatgacataattcaatgtaatcat 18513255  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 219 - 260
Target Start/End: Original strand, 18570976 - 18571017
Alignment:
Q  219 ccgataataatttgagaaaatggcttaattcaatgtattcat 260  Q
    |||||||||||||||||||||| | |||||||||||| ||||    
T  18570976 ccgataataatttgagaaaatgacataattcaatgtaatcat 18571017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 255
Target Start/End: Original strand, 40681986 - 40682022
Alignment:
Q  219 ccgataataatttgagaaaatggcttaattcaatgta 255  Q
    |||||||||||||||||||||| | ||||||||||||    
T  40681986 ccgataataatttgagaaaatgacataattcaatgta 40682022  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 255
Target Start/End: Original strand, 10395452 - 10395488
Alignment:
Q  219 ccgataataatttgagaaaatggcttaattcaatgta 255  Q
    ||||||||||||| |||||||||| ||||||||||||    
T  10395452 ccgataataatttcagaaaatggcataattcaatgta 10395488  T

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