View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_high_146 (Length: 263)
Name: NF3918_high_146
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_high_146 |
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Alignment Details
Target: chr1 (Bit Score: 123; Significance: 3e-63; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 20 - 220
Target Start/End: Complemental strand, 9579526 - 9579330
Alignment:
| Q |
20 |
ggatttttcatcataaggatttgggatactgaattgattgtcgacagtgtcaagcttttatcattaagttggttgagaataaattcgtcaaagtttatgt |
119 |
Q |
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| T |
9579526 |
ggatttttcattataaggatt--ggatactgaatcgattgtcgatagtgtcaatcttttatcatcgagttggttgagattaaagtcgtcaaagtttatgt |
9579429 |
T |
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| Q |
120 |
atggattgaaccagtggtggtcgaacccgctagtatgcttaggggtattgggggatgtttgttattgctaaatatgtgcatattattggaagcggttttg |
219 |
Q |
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| T |
9579428 |
atggattgaaccagtggtggtcgaacccgctagcatgcttaggggtatcagtggatgtttgtttttgctaaatatgtgc--attattggaagcagttttg |
9579331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 23 - 221
Target Start/End: Complemental strand, 9585061 - 9584864
Alignment:
| Q |
23 |
tttttcatcataaggatttgggatactgaattgattgtcgacagtgtcaagcttttatcattaagttggttgagaataaattcgtcaaagtttatgtatg |
122 |
Q |
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| T |
9585061 |
tttttcatcataaggatt--ggatactgaattgcttgtccatagtgtcaagcttttatcattgagttggttgagattaaagtcgtcaaagtttatgtatg |
9584964 |
T |
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| Q |
123 |
ga---ttgaaccagtggtggtcgaacccgctagtatgcttaggggtattgggggatgtttgttattgctaaatatgtgcatattattggaagcggttttg |
219 |
Q |
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| T |
9584963 |
gaatattgaaccagtggtggtcgaacccgctagcatgcttaggggtatcgggggatgtttgtttttgctaaatatttgc--attcttggaagcggttttg |
9584866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 219
Target Start/End: Original strand, 32718746 - 32718940
Alignment:
| Q |
20 |
ggatttttcatcataaggatttgggatactgaattgattgtcgacagtgtcaagcttttatcattaagttggttgagaataaattcgtcaaagtttatgt |
119 |
Q |
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| T |
32718746 |
ggatttttcatcataaggatt-gagatgatgaatcgattatggacagtgtcaagcttttatcgtggagttggcagagattagagtcgtcaaagtttaagt |
32718844 |
T |
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| Q |
120 |
atggattgaaccagtggtggtcgaacccgctagtatgcttaggggtattgggggatgtttgttattgctaaatatgtgcatattattggaagcggttttg |
219 |
Q |
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| T |
32718845 |
atgatttgaa--agtgctggttgaaccctctagcatgcttagaggtatcaggggatgtttgttctcgctaaatatgtgc--tttgttggaagcggttttg |
32718940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 214 - 249
Target Start/End: Complemental strand, 9579306 - 9579271
Alignment:
| Q |
214 |
gttttgtgctatctgtttgcagtgatgcagtcgctg |
249 |
Q |
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| T |
9579306 |
gttttgtgctatctgtttgcagtgatgcagtcgctg |
9579271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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