View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_high_147 (Length: 263)
Name: NF3918_high_147
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_high_147 |
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| [»] chr8 (6 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 12 - 263
Target Start/End: Complemental strand, 14341359 - 14341105
Alignment:
| Q |
12 |
cagagaaggaaccagagagaatttgtttaacaatccattcatttgctgcttgggagtagtgtataccatcccagctgatatatgtagaggggtcatcaca |
111 |
Q |
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| T |
14341359 |
cagagaaggaaccagagagaatttgtttaacaatccattcatttgctgcttgggagtagtgtataccatcccaactgatatatgtagaggggtcatcaca |
14341260 |
T |
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| Q |
112 |
tgcaaagccataaaatgttccattttttatgga---cttcccacaataatgtatttcgttaccttggtaacttccacaacaaaattccaatggatttata |
208 |
Q |
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| T |
14341259 |
tgcaaagccataaaatgttccattttttatggacttcttcccacaataatgtatttcgttaccttggtaacttccacaacaaaattccaatggattcata |
14341160 |
T |
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| Q |
209 |
aaacctgccacaaatcatgcaagcataaaagttaaaacttaattgtgcacattca |
263 |
Q |
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| T |
14341159 |
aaacctgccacaaatcatgcaagcataaaagttaaaacttaattgtgcacattca |
14341105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 88 - 263
Target Start/End: Complemental strand, 3602400 - 3602222
Alignment:
| Q |
88 |
gatatatgtagaggggtcatcacatgcaaagccataaaatgttccattttttatggacttc---ccacaataatgtatttcgttaccttggtaacttcca |
184 |
Q |
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| T |
3602400 |
gatatatgtagaggaatcatcacatgcaatgccataaactgttccattttttatggacttcttcccacaataatgtatttcgttaccttggtaacttcca |
3602301 |
T |
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| Q |
185 |
caacaaaattccaatggatttataaaacctgccacaaatcatgcaagcataaaagttaaaacttaattgtgcacattca |
263 |
Q |
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| T |
3602300 |
caacaaaattccaatggattcacaaaacctgccacaaatcatgcaagcataaaagttaaaacttaattgtgcacattca |
3602222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 175 - 258
Target Start/End: Complemental strand, 3569570 - 3569487
Alignment:
| Q |
175 |
gtaacttccacaacaaaattccaatggatttataaaacctgccacaaatcatgcaagcataaaagttaaaacttaattgtgcac |
258 |
Q |
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| T |
3569570 |
gtaacttccacagcaaaattccaatggattcacaagacctaccacaaatcatgcaagattaaaaattaaaacttaattgtgcac |
3569487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 175 - 258
Target Start/End: Complemental strand, 3577296 - 3577213
Alignment:
| Q |
175 |
gtaacttccacaacaaaattccaatggatttataaaacctgccacaaatcatgcaagcataaaagttaaaacttaattgtgcac |
258 |
Q |
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| T |
3577296 |
gtaacttccacagcaaaatttcaatggatttacaaaaccagccacaaatcgtgcaagaataaaaattaacacttaactgtgcac |
3577213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 66
Target Start/End: Complemental strand, 3602453 - 3602399
Alignment:
| Q |
12 |
cagagaaggaaccagagagaatttgtttaacaatccattcatttgctgcttggga |
66 |
Q |
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| T |
3602453 |
cagagaaggaaccatagagaatttgtttagcaatccattcctttgctgcttggga |
3602399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 258
Target Start/End: Complemental strand, 3591637 - 3591554
Alignment:
| Q |
175 |
gtaacttccacaacaaaattccaatggatttataaaacctgccacaaatcatgcaagcataaaagttaaaacttaattgtgcac |
258 |
Q |
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| T |
3591637 |
gtaatttccacagaaatatttcaatggattcacaaaacctgccacaaatcgtgcaagaataaaaattaacacttaactgtgcac |
3591554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 12 - 258
Target Start/End: Complemental strand, 1410059 - 1409817
Alignment:
| Q |
12 |
cagagaaggaaccagagagaatttgtttaacaatccattcatttgctgcttgggagtagtgtataccatcccagctgatatatgtagaggggtcatcaca |
111 |
Q |
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|||||||||||||| |||||||||||||| ||| ||||| |||||| ||||| |||||||||||||||||||| || |||| | |||| || | |||||| |
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| T |
1410059 |
cagagaaggaaccatagagaatttgtttagcaacccattgatttgcagcttgagagtagtgtataccatcccaactaatatgtttagaaggattatcaca |
1409960 |
T |
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| Q |
112 |
tgcaaagccataaaatgttccattttttatggacttcccacaataatgtatttcgttaccttggtaacttccacaacaaaattccaatggatttataaaa |
211 |
Q |
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| T |
1409959 |
tggattgccataaactgttccatttattatggccttcaacccacaatttatgtggtaaccatagtaacttccacagcaaaattccaatggattcacaaaa |
1409860 |
T |
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| Q |
212 |
cctgccacaaatcatgcaagcataaaagttaaaacttaattgtgcac |
258 |
Q |
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| T |
1409859 |
cctgccacaaat----caagcatgagagttaaaacctaattgtgcac |
1409817 |
T |
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