View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_high_149 (Length: 262)
Name: NF3918_high_149
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_high_149 |
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Alignment Details
Target: chr3 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 91 - 248
Target Start/End: Original strand, 47713356 - 47713513
Alignment:
| Q |
91 |
ctgtaggctgctaatttcttttgattccattcttctttctggattttacgtatattggtaccttgcagaagacggtaaaggatttctgggagatctttga |
190 |
Q |
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| T |
47713356 |
ctgtaggctgctaatttcttttgattccattcttctttctggattttacgtatattggtaccttgcagaagacggtaaaggatttctgggagatctttga |
47713455 |
T |
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| Q |
191 |
agtaaccaaattcagcaagggaagggacgttagaagctagggttttagggtggcagtg |
248 |
Q |
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| T |
47713456 |
agtaaccaaagtcagcaagggaagggacgttagaagctagggttttagggtggtagtg |
47713513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 47713262 - 47713324
Alignment:
| Q |
16 |
agggggtttaaactcccattgttcttgatcgaattttctaacaccaaaacgggtttttgattt |
78 |
Q |
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| T |
47713262 |
agggggtttaaactcccattgttcttgatcgaattttcttacaccaaagcgggtttttgattt |
47713324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 104 - 209
Target Start/End: Complemental strand, 19785285 - 19785180
Alignment:
| Q |
104 |
atttcttttgattccattcttctttctggattttacgtatattggtaccttgcagaagacggtaaaggatttctgggagatctttgaagtaaccaaattc |
203 |
Q |
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| T |
19785285 |
atttcctttcattccactcttctttctggatttcacgaattccagaaccttggagaatacggtatagaatttcagggagatctttgaagtaaccaaagtc |
19785186 |
T |
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| Q |
204 |
agcaag |
209 |
Q |
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| T |
19785185 |
agcaag |
19785180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 157 - 242
Target Start/End: Original strand, 19796370 - 19796455
Alignment:
| Q |
157 |
agaagacggtaaaggatttctgggagatctttgaagtaaccaaattcagcaagggaagggacgttagaagctagggttttagggtg |
242 |
Q |
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| T |
19796370 |
agaagacggtagaggatctcagggagatctttgaagtagccaaagtcagcgagagaaggaacattggtagctagggttttagggtg |
19796455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 157 - 242
Target Start/End: Original strand, 15835608 - 15835693
Alignment:
| Q |
157 |
agaagacggtaaaggatttctgggagatctttgaagtaaccaaattcagcaagggaagggacgttagaagctagggttttagggtg |
242 |
Q |
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| T |
15835608 |
agaagacggtagaggatctcagggagatctttgaagtaaccaaaggcagcgaatgaagaaacattggtagctagggttttagggtg |
15835693 |
T |
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