View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_high_161 (Length: 252)
Name: NF3918_high_161
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_high_161 |
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| [»] chr2 (2 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 17 - 252
Target Start/End: Complemental strand, 34326727 - 34326493
Alignment:
| Q |
17 |
aaaactcgcggccaaaactgagatacaagaaagtgcgcaaaaacagcacagccaaaaacataaaagcacctagccacaccacgcagggagggaaaaaaca |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
34326727 |
aaaactcgcggccaaaactgagatacaagaaagtgcgcaaaaacagcacagcaaaaaacataaaagcacctagccacaccatgcagggagggaaaaaaca |
34326628 |
T |
|
| Q |
117 |
gaacgnnnnnnncccccagccgctgaaaaaccagtcaggcgaaccagaccagcaacaggacagcagcacaggtgtaaagaagcaggacagcagggaggct |
216 |
Q |
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|||| |||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||| |||||| |
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| T |
34326627 |
gaac-caaaaaacccccagcagctgaaaaaccagtcaggcataccagaccagcaacagcacagcagcacaggtgcaaagaagcaggacagcagcgaggct |
34326529 |
T |
|
| Q |
217 |
gtcatatactcctagccgaaaaatcagaacagcagc |
252 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
34326528 |
gtcatatactcctagccgaaaaatcagaacagcagc |
34326493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 118
Target Start/End: Original strand, 21428019 - 21428059
Alignment:
| Q |
78 |
aaaagcacctagccacaccacgcagggagggaaaaaacaga |
118 |
Q |
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||||||||| ||||||||||| ||||||||||||||||||| |
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| T |
21428019 |
aaaagcacccagccacaccacacagggagggaaaaaacaga |
21428059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 17 - 252
Target Start/End: Complemental strand, 4028797 - 4028569
Alignment:
| Q |
17 |
aaaactcgcggccaaaactgagatacaagaaagtgcgcaaaaacagcacagccaaaaacataaaagcacctagccacaccacgcagggagggaaaaaaca |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |
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| T |
4028797 |
aaaactcgcggccaaaactgagatacaagaaagtgcgcaaaaacagcacagccaaaaacaaaaaagcacctagccacaccgcgcagggagggaaaaaaca |
4028698 |
T |
|
| Q |
117 |
gaacgnnnnnnncccccagccgctgaaaaaccagtcaggcgaaccagaccagcaacaggacagcagcacaggtgtaaagaagcaggacagcagggaggct |
216 |
Q |
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|||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
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| T |
4028697 |
gaactaaaaa-------agcagctgaaaaaccagtcaggcataccagaccagcaacaggacagcagcacaggtgcaaagaagcaggacagcagtgaggcc |
4028605 |
T |
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| Q |
217 |
gtcatatactcctagccgaaaaatcagaacagcagc |
252 |
Q |
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||||||||||||||||| ||||| |||||||||||| |
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| T |
4028604 |
gtcatatactcctagccaaaaaagcagaacagcagc |
4028569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 17 - 120
Target Start/End: Complemental strand, 15559310 - 15559207
Alignment:
| Q |
17 |
aaaactcgcggccaaaactgagatacaagaaagtgcgcaaaaacagcacagccaaa-aacataaaagcacctagccacaccacgcagggagggaaaaaac |
115 |
Q |
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|||||| ||||||||||| ||||||||| || |||||||||||||||||||||||| |||| ||| |||| |||||||||||||||||||||||||||| |
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| T |
15559310 |
aaaacttgcggccaaaacagagatacaataatgtgcgcaaaaacagcacagccaaacaaca-gaaatcacccagccacaccacgcagggagggaaaaaac |
15559212 |
T |
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| Q |
116 |
agaac |
120 |
Q |
| |
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|||| |
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| T |
15559211 |
tgaac |
15559207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 176 - 252
Target Start/End: Original strand, 28110904 - 28110980
Alignment:
| Q |
176 |
acagcagcacaggtgtaaagaagcaggacagcagggaggctgtcatatactcctagccgaaaaatcagaacagcagc |
252 |
Q |
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|||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||| ||| | |||| ||||||| |
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| T |
28110904 |
acagcagcgcaggtgcaaagaagcaggacagcaatgaggctgtcatatactcctagccaaaacagcagagcagcagc |
28110980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 113
Target Start/End: Original strand, 28110792 - 28110827
Alignment:
| Q |
78 |
aaaagcacctagccacaccacgcagggagggaaaaa |
113 |
Q |
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||||||||| |||||||||||||||||||||||||| |
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| T |
28110792 |
aaaagcacccagccacaccacgcagggagggaaaaa |
28110827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 176 - 252
Target Start/End: Complemental strand, 24837345 - 24837269
Alignment:
| Q |
176 |
acagcagcacaggtgtaaagaagcaggacagcagggaggctgtcatatactcctagccgaaaaatcagaacagcagc |
252 |
Q |
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|||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||| ||| | |||| ||||||| |
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| T |
24837345 |
acagcagcgcaggtgcaaagaagcaggacagcaatgaggctgtcatatactcctagccaaaacagcagagcagcagc |
24837269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 113
Target Start/End: Complemental strand, 24837441 - 24837406
Alignment:
| Q |
78 |
aaaagcacctagccacaccacgcagggagggaaaaa |
113 |
Q |
| |
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||||||||| |||||||||||||||||||||||||| |
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| T |
24837441 |
aaaagcacccagccacaccacgcagggagggaaaaa |
24837406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 120
Target Start/End: Original strand, 35052140 - 35052241
Alignment:
| Q |
21 |
ctcgcggccaaaactgagatacaagaaagtgcgcaaaaacagcacagccaaaa--acataaaagcacctagccacaccacgcagggagggaaaaaacaga |
118 |
Q |
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|||||||||||||| || |||||| || |||||| ||| |||||||||||| ||| |||| ||| | |||||||||||||||||||||||| |||| |
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| T |
35052140 |
ctcgcggccaaaacagaaatacaaaaacgtgcgccaaactggcacagccaaaacaacagaaaaacacacatccacaccacgcagggagggaaaaaccaga |
35052239 |
T |
|
| Q |
119 |
ac |
120 |
Q |
| |
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|| |
|
|
| T |
35052240 |
ac |
35052241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 78 - 119
Target Start/End: Original strand, 4615789 - 4615830
Alignment:
| Q |
78 |
aaaagcacctagccacaccacgcagggagggaaaaaacagaa |
119 |
Q |
| |
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|||| |||| |||||| ||||||||||||||||||||||||| |
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| T |
4615789 |
aaaaacacccagccacgccacgcagggagggaaaaaacagaa |
4615830 |
T |
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