View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_high_162 (Length: 250)
Name: NF3918_high_162
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_high_162 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 146; Significance: 5e-77; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 76 - 250
Target Start/End: Complemental strand, 45138539 - 45138365
Alignment:
| Q |
76 |
tagagggaggtatattggtgttagttcctgagagattctaatgaggttgttatctgattatcaatgggctactcttctcaagaccatgagaacaaatggt |
175 |
Q |
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| T |
45138539 |
tagagggaggtatattggtgttagttccagagagattctaatgaggttgttatctgattatcaatgggctactcttctcaagaccatgcgaacaaatggt |
45138440 |
T |
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| Q |
176 |
ctcgtattttatcatatagataggatatcattgtttttgtcacnnnnnnngtttattttcttagaccatcatcct |
250 |
Q |
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| T |
45138439 |
ctcgtattttatcatatagataggatatcattgtttttgtcactttttttgtttattttcttagaccatcatcct |
45138365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 45138585 - 45138539
Alignment:
| Q |
11 |
caaaggattaaggaaggttatccagtctctcctctcctcttttgtat |
57 |
Q |
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| T |
45138585 |
caaaggattaaggaaggttatccactctctcctctcctcttttgtat |
45138539 |
T |
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