View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_high_165 (Length: 250)
Name: NF3918_high_165
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_high_165 |
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Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 11 - 226
Target Start/End: Original strand, 17777062 - 17777277
Alignment:
| Q |
11 |
cacagaagcaccaggcagttgctcttcgtgtcggtgctgatcaatccgtcatcaaccgctgcaaaattgatgcatttcaagacactctctatgcacactc |
110 |
Q |
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| T |
17777062 |
cacagaagcaccaggcagttgctcttcgtgtcggcgctgatcaatccgtcatcaaccgctgcaaaattgatgcatttcaagacactctctatgcacactc |
17777161 |
T |
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| Q |
111 |
caaccgacaattttaccgtgactcatacattaccggtaccgttgactttatctttggaaacgcagctgttgttttccagaagagcaaacttgcggcccga |
210 |
Q |
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| T |
17777162 |
caaccgacaattttaccgtgactcatacattaccggtaccgttgactttatctttggaaacgcagctgttgttttccagaagagcaaacttgcggcccga |
17777261 |
T |
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| Q |
211 |
aagcccatggccaacc |
226 |
Q |
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| T |
17777262 |
aaacccatggccaacc |
17777277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 11 - 226
Target Start/End: Original strand, 17807755 - 17807970
Alignment:
| Q |
11 |
cacagaagcaccaggcagttgctcttcgtgtcggtgctgatcaatccgtcatcaaccgctgcaaaattgatgcatttcaagacactctctatgcacactc |
110 |
Q |
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|||||||||| |||||||||||||| || ||||| |||||| ||| ||||| ||||| ||||||||||||||||||||||||||||| || |||||| | |
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| T |
17807755 |
cacagaagcatcaggcagttgctctgcgcgtcggctctgatcgatctgtcattaaccgttgcaaaattgatgcatttcaagacactctatacgcacacac |
17807854 |
T |
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| Q |
111 |
caaccgacaattttaccgtgactcatacattaccggtaccgttgactttatctttggaaacgcagctgttgttttccagaagagcaaacttgcggcccga |
210 |
Q |
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| T |
17807855 |
caaccgacaattttaccgtgactccttcattaccggtaccattgactttatctttggagacgcagctgttgtgttgcagaagtgcaaactcgtggcccga |
17807954 |
T |
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| Q |
211 |
aagcccatggccaacc |
226 |
Q |
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| T |
17807955 |
aagcccatggccaacc |
17807970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 16 - 226
Target Start/End: Original strand, 17821664 - 17821874
Alignment:
| Q |
16 |
aagcaccaggcagttgctcttcgtgtcggtgctgatcaatccgtcatcaaccgctgcaaaattgatgcatttcaagacactctctatgcacactccaacc |
115 |
Q |
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|||||||||||||| ||||| |||||||| |||| ||||| ||||||||||| ||| ||||| || |||||||||||||| || ||||||||||||| |
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| T |
17821664 |
aagcaccaggcagtggctctccgtgtcggctctgaccaatctgtcatcaaccgttgccgcattgacgcctttcaagacactctttacgcacactccaacc |
17821763 |
T |
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| Q |
116 |
gacaattttaccgtgactcatacattaccggtaccgttgactttatctttggaaacgcagctgttgttttccagaagagcaaacttgcggcccgaaagcc |
215 |
Q |
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| T |
17821764 |
ggcagttttaccgtgactctgtcattacaggtaccattgacttcatctttggaaatgcagctgttgtgttccagaagtgcaagttggtggcccgtaaacc |
17821863 |
T |
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| Q |
216 |
catggccaacc |
226 |
Q |
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| T |
17821864 |
catggccaacc |
17821874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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