View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_high_166 (Length: 250)
Name: NF3918_high_166
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_high_166 |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 33251842 - 33252083
Alignment:
| Q |
1 |
caatccttaattgaagagaaaaatatgtatcagaacataacataacaaataaaaaagaataaatggagaatgaacctgactaataacaaatggagcttgt |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33251842 |
caatacttaattgaagagaaaaatatgtatcagaacataacataacaaataaaaaagaataaatggagaatgaacctgactaataacaaatggagcttgt |
33251941 |
T |
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| Q |
101 |
ttccaatgaaatgcaaaataactgaggatgcatttctcaaactcattaaccaacttgacatagagagattcatagtccttttcattgccaagatattcaa |
200 |
Q |
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| T |
33251942 |
ttccaatgaaatgcaaaataactgaggatgcatttctcaaactcattaaccaacttgacatagagagattcatagtccttttcattgccaagatattcaa |
33252041 |
T |
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| Q |
201 |
agatgctttgatcacatcctttggatttttgtagatattctt |
242 |
Q |
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| T |
33252042 |
agatgctttgatcacatcctttggatttttgtagatattctt |
33252083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 33272014 - 33272255
Alignment:
| Q |
1 |
caatccttaattgaagagaaaaatatgtatcagaacataacataacaaataaaaaagaataaatggagaatgaacctgactaataacaaatggagcttgt |
100 |
Q |
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| T |
33272014 |
caatacttaattgaagagaaaaatatgtatcagaacataacataacaaataaaaaagaataaatggagaatgaacctgactaataacaaatggagcttgt |
33272113 |
T |
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| Q |
101 |
ttccaatgaaatgcaaaataactgaggatgcatttctcaaactcattaaccaacttgacatagagagattcatagtccttttcattgccaagatattcaa |
200 |
Q |
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| T |
33272114 |
ttccaatgaaatgcaaaataactgaggatgcatttctcaaactcattaaccaacttgacatagagagattcatagtccttttcattgccaagatattcaa |
33272213 |
T |
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| Q |
201 |
agatgctttgatcacatcctttggatttttgtagatattctt |
242 |
Q |
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| T |
33272214 |
agatgctttgatcacatcctttggatttttgtagatattctt |
33272255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 63 - 242
Target Start/End: Original strand, 33303705 - 33303884
Alignment:
| Q |
63 |
atggagaatgaacctgactaataacaaatggagcttgtttccaatgaaatgcaaaataactgaggatgcatttctcaaactcattaaccaacttgacata |
162 |
Q |
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||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||| || ||||| |
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| T |
33303705 |
atggagaatgaacctgactaacaacatatggagcttgtttccaatgaaatgcaaaataactgaggatgcatctctcgaactcatcaaccaatttaacata |
33303804 |
T |
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| Q |
163 |
gagagattcatagtccttttcattgccaagatattcaaagatgctttgatcacatcctttggatttttgtagatattctt |
242 |
Q |
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| T |
33303805 |
gagagattcagagtcattttcattggcaagatatgcatagatgctttggtcacacgctttggatttttgtagatattctt |
33303884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 74 - 146
Target Start/End: Original strand, 33312301 - 33312373
Alignment:
| Q |
74 |
acctgactaataacaaatggagcttgtttccaatgaaatgcaaaataactgaggatgcatttctcaaactcat |
146 |
Q |
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||||||||||||| | ||| |||||| |||||||||| ||||||||||||||||| ||| | |||||||||| |
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| T |
33312301 |
acctgactaataatatatgaagcttggctccaatgaaaagcaaaataactgaggatacatctttcaaactcat |
33312373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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