View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3918_high_169 (Length: 249)
Name: NF3918_high_169
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_high_169 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 12 - 231
Target Start/End: Original strand, 37487460 - 37487679
Alignment:
| Q |
12 |
atgaaagagggaaacggcaacttaaatatgtatgggaatcgaaacgcgttaaagatcttgagattagtgactgctctgtgcatgacgatgacattgagcc |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
37487460 |
atgaaagagggaaacggcaacttaaatatgtatgggaatcgaaacgcgttaaagatcttgagattagtgactgctttgtgcatgacgatgacattaagcc |
37487559 |
T |
|
| Q |
112 |
tcttatatttaaatgtgatcgcttcgagtataggaataaggcacagattcaaaaagataaggagattaaagtcgccatggctgagtacaaacagctccgt |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37487560 |
tcttatatttaaatgtgatcgcttcgagtataggaataaggcacagattcaaaaagataaggagattaaagtcgccatggctgagtacaaacagctccgt |
37487659 |
T |
|
| Q |
212 |
cgcggcctaagtgtacgtat |
231 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
37487660 |
cgcggcctaagtgtacgtat |
37487679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 35 - 198
Target Start/End: Original strand, 37473070 - 37473233
Alignment:
| Q |
35 |
aaatatgtatgggaatcgaaacgcgttaaagatcttgagattagtgactgctctgtgcatgacgatgacattgagcctcttatatttaaatgtgatcgct |
134 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||||||||||| ||||||| |||| || ||||||||||||||||||| |||| |||| ||| | |||| |
|
|
| T |
37473070 |
aaatatgaatgggaatcgaaacgcgttgaagatcttgagatgagtgacttctctatgtttgacgatgacattgagccttttatgtttatatgcgcgcgct |
37473169 |
T |
|
| Q |
135 |
tcgagtataggaataaggcacagattcaaaaagataaggagattaaagtcgccatggctgagta |
198 |
Q |
| |
|
| || | ||||||||| |||||||||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
37473170 |
ttatttacaagaataaggcccagattcaaaaagataaggagattgaagtagccatggctgagta |
37473233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 35 - 198
Target Start/End: Original strand, 37481786 - 37481949
Alignment:
| Q |
35 |
aaatatgtatgggaatcgaaacgcgttaaagatcttgagattagtgactgctctgtgcatgacgatgacattgagcctcttatatttaaatgtgatcgct |
134 |
Q |
| |
|
||||||| |||||||||||||||||| |||||||||| || ||||||| |||| || ||||||||||||||||||| |||| |||| ||| | |||| |
|
|
| T |
37481786 |
aaatatgaatgggaatcgaaacgcgtcgaagatcttgatatgagtgacttctctatgtttgacgatgacattgagccttttatgtttatatgcgcgcgct |
37481885 |
T |
|
| Q |
135 |
tcgagtataggaataaggcacagattcaaaaagataaggagattaaagtcgccatggctgagta |
198 |
Q |
| |
|
| || | ||||||||| |||||||||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
37481886 |
ttatttacaagaataaggcccagattcaaaaagataaggagattgaagtagccatggctgagta |
37481949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 35 - 193
Target Start/End: Original strand, 37492707 - 37492865
Alignment:
| Q |
35 |
aaatatgtatgggaatcgaaacgcgttaaagatcttgagattagtgactgctctgtgcatgacgatgacattgagcctcttatatttaaatgtgatcgct |
134 |
Q |
| |
|
||||||| |||||||| ||||||| || ||||||||||||||||||||| |||| || |||||||||||||| ||||| |||| |||| |||| || | |
|
|
| T |
37492707 |
aaatatgaatgggaattgaaacgctttgaagatcttgagattagtgacttctctatgtatgacgatgacattaagccttttatgtttatgtgtgggcgat |
37492806 |
T |
|
| Q |
135 |
tcgagtataggaataaggcacagattcaaaaagataaggagattaaagtcgccatggct |
193 |
Q |
| |
|
| ||||| ||||||||| ||||||||| ||||||||||||||| | |||||| |||| |
|
|
| T |
37492807 |
ttacgtataagaataaggctcagattcaacaagataaggagattagaatcgccagggct |
37492865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 93 - 199
Target Start/End: Original strand, 38922180 - 38922286
Alignment:
| Q |
93 |
atgacgatgacattgagcctcttatatttaaatgtgatcgcttcgagtataggaataaggcacagattcaaaaagataaggagattaaagtcgccatggc |
192 |
Q |
| |
|
|||| ||||||||||||||| || | |||| |||||||| || ||||||| ||||||||| |||||| || |||| |||||||| ||| |||||||| |
|
|
| T |
38922180 |
atgatgatgacattgagccttttgtgattaagtgtgatcgatttgagtataagaataaggctcagattaaactagatgaggagattgaagcagccatggc |
38922279 |
T |
|
| Q |
193 |
tgagtac |
199 |
Q |
| |
|
|||||| |
|
|
| T |
38922280 |
ggagtac |
38922286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University