View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_high_171 (Length: 248)
Name: NF3918_high_171
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_high_171 |
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Alignment Details
Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 7005141 - 7005378
Alignment:
| Q |
1 |
ttgtgaattaattctaaacaaaatctataacaataattaaacaatgctaatgaaaattattgatgtaatactaattaaaaggattggtcccatgcaaagg |
100 |
Q |
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| T |
7005141 |
ttgtgaattaattctaaacaaaatctatagcagtaattaaacaatgctaatgaaaattattgatgcaatactaattaaaaggattggtcccatgcaaagg |
7005240 |
T |
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| Q |
101 |
ttgaaacagaaacctattttcagctacacaacaaagggataagagtgtcagttgaagagatttgcttgaatttttgttccctcccccaagaaattaacac |
200 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
7005241 |
ttgaaatagaaacctattttcagctacacaacaaagggataagagtgtcagttgaagagatttgcttgaatttttgttccctcgcccaagaaattaacac |
7005340 |
T |
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| Q |
201 |
ttacctatcttatttaatttcatacttgtttgatgcct |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
7005341 |
ttacctatcttatttaatttcatacttgtttgatgcct |
7005378 |
T |
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