View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_high_173 (Length: 248)
Name: NF3918_high_173
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_high_173 |
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Alignment Details
Target: chr3 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 9 - 135
Target Start/End: Original strand, 45176846 - 45176972
Alignment:
| Q |
9 |
cagagacaaaagtttcttcattcacatggattcaacagcaacttatgttcctttcattaatttaaaattcacagaggtgcatgccctacaaaactaccaa |
108 |
Q |
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| T |
45176846 |
cagagacaaaagtttcttcattcacatggattcaacagcaacttatgttcctttcattaatttaaaattcacagaggtgcatgccctacaaaactaccaa |
45176945 |
T |
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| Q |
109 |
catgtttgtaagctctcaaatcctgtc |
135 |
Q |
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| T |
45176946 |
catgtttgtaagctctcaaatcctgtc |
45176972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 219 - 248
Target Start/End: Original strand, 45177056 - 45177085
Alignment:
| Q |
219 |
acattaggtaaggaaattccaaaaagtaac |
248 |
Q |
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| T |
45177056 |
acattaggtaaggaaattccaaaaagtaac |
45177085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 9 - 129
Target Start/End: Original strand, 35313545 - 35313665
Alignment:
| Q |
9 |
cagagacaaaagtttcttcattcacatggattcaacagcaacttatgttcctttcattaatttaaaattcacagaggtgcatgccctacaaaactaccaa |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35313545 |
cagagacaaaagtttcttcattcacatggattcaacagcaacttatgttccgttcattaatttaaaattcacagaggtgcatgccctacaaaactaccaa |
35313644 |
T |
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| Q |
109 |
catgtttgtaagctctcaaat |
129 |
Q |
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| T |
35313645 |
catgtttgtaagctctcaaat |
35313665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 27430039 - 27429986
Alignment:
| Q |
18 |
aagtttcttcattcacatggattcaacagcaacttatgttcctttcattaattt |
71 |
Q |
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|||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
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| T |
27430039 |
aagtttcttcattcacatggattcaacatcaactaatgttcctttcattaattt |
27429986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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