View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_high_174 (Length: 247)
Name: NF3918_high_174
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_high_174 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 25066249 - 25066491
Alignment:
| Q |
1 |
aaaaacaaatgataaatcatgtaaagcaattcataattatgaatgatttaaactattgcatgacaatagaatcaacaaaattaaactaacaattaaaaat |
100 |
Q |
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| T |
25066249 |
aaaaacaaatgataaatcatctaaagcaattcataattatgaatgatttaaactattgcatgacaatagaatcaacaaaattaaactaacaattaaaaat |
25066348 |
T |
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| Q |
101 |
attggcaaaatttcaactttgaccaaccaattaatcaaccattaattaaagatgatctcac---tcaaaatatacgactttaaccattaatttttcataa |
197 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
25066349 |
attggcaaaatttcgactttgaccaaccaattaatcaaccattaattaaagatgatctcacatgtcaaaatatacgactttaaccattaatttttcataa |
25066448 |
T |
|
| Q |
198 |
attatgtatatgcacatacatttaattacaactttgacctttg |
240 |
Q |
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| |||||||||| |||||||||||||||||||||||| ||||| |
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| T |
25066449 |
actatgtatatgtacatacatttaattacaactttgagctttg |
25066491 |
T |
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