View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_high_192 (Length: 239)
Name: NF3918_high_192
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_high_192 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 39360220 - 39359999
Alignment:
| Q |
18 |
gtctactacgatgagatgaagacccatgattagttgaggcatcgtcaataggttgaggagaagcaggagaagaaggagaacaatagtagagagaatcaat |
117 |
Q |
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| T |
39360220 |
gtctactacgatgagatgaagacccatgattagttgaggcatcgtcaataggttgaggagaagcaggagaagaaggagaacaatagtagagagaatcaac |
39360121 |
T |
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| Q |
118 |
agggttcttggagtataggtttgagagtttgtctcttaaacaagaggaacaaacccctggtaattgtttatcatttggatgttctttgcaccttaatctt |
217 |
Q |
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| T |
39360120 |
agggttcttggagtataggtttgagagtttgtctcttaaacaagaggaacaaacacctggtaattgtttatcatttggatgttctttgcaccttaatctt |
39360021 |
T |
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| Q |
218 |
gttgcttctaattcgcaccact |
239 |
Q |
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| T |
39360020 |
gttgcttctaattcgcaccact |
39359999 |
T |
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