View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3918_high_201 (Length: 236)
Name: NF3918_high_201
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_high_201 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 146; Significance: 5e-77; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 41 - 219
Target Start/End: Original strand, 6395249 - 6395427
Alignment:
| Q |
41 |
actagtttaagagtttatagtgttactgctcctatagtatatctatcatataaaatgcatatgcnnnnnnntaggtgcattataacagttgatacatgtt |
140 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
6395249 |
actagtttaagagtttatagtgttactgctcctatagtatatatctcatataaaatgcatatgcaaaaaaataggtacattataacagttgatacatgtt |
6395348 |
T |
|
| Q |
141 |
agccaactatgaaatttcttcccattctcatcaatttcttctgaatttgaaactggtttttataatttgtgtgttcaat |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6395349 |
agccaactatgaaatttcttcccattctcatcaatttcttctgaatttgaaactggtttttataatttgtgtgttcaat |
6395427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 150 - 191
Target Start/End: Original strand, 43597806 - 43597847
Alignment:
| Q |
150 |
tgaaatttcttcccattctcatcaatttcttctgaatttgaa |
191 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
43597806 |
tgaaatttcttaccattctcatcaatttcttctgaatttgaa |
43597847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University