View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_high_207 (Length: 235)
Name: NF3918_high_207
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_high_207 |
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Alignment Details
Target: chr5 (Bit Score: 113; Significance: 2e-57; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 13001110 - 13001230
Alignment:
| Q |
18 |
aagttaacctataaacaattttaaaaaatttattgacaaagactagttgaaaggggaattgatttatgacgaattttgtttaaaaaatctatttcatgac |
117 |
Q |
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||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13001110 |
aagttaacctatatacaatttttaaaaatttattgacaaagactagttgaaaggggaattgatttatgacgaattttgtttaaaaaatctatttcatgac |
13001209 |
T |
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| Q |
118 |
caatttaaattcatccttttt |
138 |
Q |
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||||||||||||||||||||| |
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| T |
13001210 |
caatttaaattcatccttttt |
13001230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 13075748 - 13075868
Alignment:
| Q |
18 |
aagttaacctataaacaattttaaaaaatttattgacaaagactagttgaaaggggaattgatttatgacgaattttgtttaaaaaatctatttcatgac |
117 |
Q |
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||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13075748 |
aagttaacctatatacaatttttaaaaatttattgacaaagactagttgaaaggggaattgatttatgacgaattttgtttaaaaaatctatttcatgac |
13075847 |
T |
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| Q |
118 |
caatttaaattcatccttttt |
138 |
Q |
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||||||||||||||||||||| |
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| T |
13075848 |
caatttaaattcatccttttt |
13075868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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