View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3918_high_210 (Length: 231)
Name: NF3918_high_210
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_high_210 |
 | |
|
| [»] chr1 (4 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 178; Significance: 4e-96; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 46 - 231
Target Start/End: Original strand, 5398724 - 5398909
Alignment:
| Q |
46 |
tgtataatatgtgtttgaatgatcctaacatgtgtggctactacagtagtgtgtgtcctctccctcctctgtctagcaaagatctccaatccaccgcagc |
145 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
5398724 |
tgtataatatgtgtttgaatgatcctaacatgtgtggctactacagtagtgtgtgtcctctccctcctctgtctagcaaagatctccaatccactgcagc |
5398823 |
T |
|
| Q |
146 |
taaaaatggtaatcctacaattgaaatccttccatgatgagagattgtggccatggtttgtgtgttattgttgatatatttttatc |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
5398824 |
taaaaatggtaatcctacaattgaaatccttccatgatgagagattgtggccatggtttgtgtgttattattgatatatttttatc |
5398909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 126 - 215
Target Start/End: Original strand, 5389922 - 5390011
Alignment:
| Q |
126 |
gatctccaatccaccgcagctaaaaatggtaatcctacaattgaaatccttccatgatgagagattgtggccatggtttgtgtgttattg |
215 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||||||| ||||||| |||||| |||||||||||||||||| |||||| |||||||||| |
|
|
| T |
5389922 |
gatctccaatccaccacagctaaaagtggtaatcctaatattgaaagccttccgtgatgagagattgtggccgtggtttatgtgttattg |
5390011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 5398660 - 5398697
Alignment:
| Q |
1 |
catgtttacgaatctcaaaagttgatttcggctgagcc |
38 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5398660 |
catgtttacgaatctcaaaagttgatttcggctgagcc |
5398697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 145 - 217
Target Start/End: Original strand, 5393660 - 5393732
Alignment:
| Q |
145 |
ctaaaaatggtaatcctacaattgaaatccttccatgatgagagattgtggccatggtttgtgtgttattgtt |
217 |
Q |
| |
|
|||||| ||||||| ||| |||||| | |||||| ||||||||| |||||| |||||||| |||||||||||| |
|
|
| T |
5393660 |
ctaaaagtggtaattctaaaattgacagccttccgtgatgagaggttgtggtcatggtttatgtgttattgtt |
5393732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 167 - 214
Target Start/End: Original strand, 54714604 - 54714651
Alignment:
| Q |
167 |
tgaaatccttccatgatgagagattgtggccatggtttgtgtgttatt |
214 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
54714604 |
tgaaatccttccatgatcagagattgcggccatggtttgtgtgttatt |
54714651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 214
Target Start/End: Original strand, 54721548 - 54721595
Alignment:
| Q |
167 |
tgaaatccttccatgatgagagattgtggccatggtttgtgtgttatt |
214 |
Q |
| |
|
|||||||||||| |||| |||||||| ||||||||||||||||||||| |
|
|
| T |
54721548 |
tgaaatccttccttgatcagagattgcggccatggtttgtgtgttatt |
54721595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 214
Target Start/End: Original strand, 5297701 - 5297748
Alignment:
| Q |
167 |
tgaaatccttccatgatgagagattgtggccatggtttgtgtgttatt |
214 |
Q |
| |
|
|||||||||||| |||| |||||||| ||||||||||||||||||||| |
|
|
| T |
5297701 |
tgaaatccttccttgatcagagattgcggccatggtttgtgtgttatt |
5297748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University