View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_high_211 (Length: 230)
Name: NF3918_high_211
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_high_211 |
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Alignment Details
Target: chr4 (Bit Score: 169; Significance: 9e-91; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 11 - 195
Target Start/End: Complemental strand, 27646113 - 27645929
Alignment:
| Q |
11 |
tattcctttgctagtgtacttttttctattttggattctacactacctcctccattaaaagcaaccttgtcttgaggttgaagttaggatagctatgttg |
110 |
Q |
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| T |
27646113 |
tattcctttgctagtgtacttttttctattttggattctacactacctcctccactaaaagcaaccttatcttgaggttgaagttaggatagctatgttg |
27646014 |
T |
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| Q |
111 |
gatgtttataaaatcctccctcttgggatgtctatgtcaagtacattttaataagacttcaggaatgtgtacatacatttttgct |
195 |
Q |
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| T |
27646013 |
gatgtttataaaatcctccctcttgggatgactaagtcaagtacattttaataagacttcaggaatgtgtacatacatttttgct |
27645929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 12 - 78
Target Start/End: Complemental strand, 27642890 - 27642823
Alignment:
| Q |
12 |
attcctttgctagtgtactttttt-ctattttggattctacactacctcctccattaaaagcaacctt |
78 |
Q |
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|||||||||| ||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||| |
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| T |
27642890 |
attcctttgccagtgtactttttttctattttggactctacactacctcctccactaaaagcaacctt |
27642823 |
T |
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