View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_high_214 (Length: 227)
Name: NF3918_high_214
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_high_214 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 50463375 - 50463595
Alignment:
| Q |
1 |
ccaatctttcacaccatgagactcaaccatctcttccattgatctcttaaaatcttcatatggatcctctgactccatagctaacacaacactttctttg |
100 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50463375 |
ccaatctttcacaccatgagactcaacaatctcttccattgatctcttaaaatcttcatatggatcctctgactccatagctaacacaacactttctttg |
50463474 |
T |
|
| Q |
101 |
aatggaaaaccattcgccttcgccttttctaagatcgaactcgtgtcttctgcttcgaaaaacaatctctccgacttaactcctcgtaccaatgtctcca |
200 |
Q |
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|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50463475 |
aatggaaaaccattagccttcgccttttctaagatcgaactcgtgtcttctgcttcgaaaaacaatctctccgacttaactcctcgtaccaatgtctcca |
50463574 |
T |
|
| Q |
201 |
atgattcgccgtcgttgtagc |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
50463575 |
atgattcgccgtcgttgtagc |
50463595 |
T |
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