View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_high_215 (Length: 227)
Name: NF3918_high_215
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_high_215 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 5398622 - 5398402
Alignment:
| Q |
1 |
ccctcagcactatagccattcaaaatcgccgcaacaaggagaaccaaaacaagtgaagcagtggattttgccatagtgtaagtatgaatgagtattttat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5398622 |
ccctcagcactatagccattcaaaatcgccgcaacaaggagaaccaaaacaagtgaagcagtggattttgccatagtgtaagtatgaatgagtattttat |
5398523 |
T |
|
| Q |
101 |
tttcctcttgtcgatggatattgttttgcaatggaatacaattgtctccaaaccactccaatttatagaactatatgatttccttaaatgagaagtgaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
5398522 |
tttcctcttgtcgatggatattgttttgcaatggaataaaattgtctccaaaccactccgatttatagaactatatgatttccttaaatgagaagtgaat |
5398423 |
T |
|
| Q |
201 |
gaattaactctgccttgtcat |
221 |
Q |
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|||||||||||||| |||||| |
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| T |
5398422 |
gaattaactctgccgtgtcat |
5398402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 22 - 207
Target Start/End: Complemental strand, 5389065 - 5388875
Alignment:
| Q |
22 |
aaaatcgccgcaacaaggagaaccaaaacaagtgaagcagtggattttgccatagtgtaagtatgaa-------tgagtattttattttcctcttgtcga |
114 |
Q |
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||||||||| ||||||| ||||||||||||| |||||||| |||||||||||||||||||||||| | |||||||||||||||| ||||||| |
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| T |
5389065 |
aaaatcgccacaacaagaagaaccaaaacaacagaagcagtaaattttgccatagtgtaagtatgaactatgaataagtattttattttccttttgtcga |
5388966 |
T |
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| Q |
115 |
tggatattgttttgcaatggaatacaattgtctccaaaccactccaatttatagaactatatgatttccttaaatgagaagtgaatgaattaa |
207 |
Q |
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| T |
5388965 |
tggatattgttttg-gatggaataaaactgactgcaaaccactgcaatttatcgaacta-atgatttccttaaatgagaagtgaatgaattaa |
5388875 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 9e-20; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 4218216 - 4218139
Alignment:
| Q |
1 |
ccctcagcactatagccattcaaaatcgccgcaacaaggagaaccaaaacaagtgaagcagtggattttgccatagtg |
78 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||||||||||| ||||||| ||||||| ||| ||||||||||||| |
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| T |
4218216 |
ccctcagcactatagccattcaaaattgcaacaacaaggagaactaaaacaattgaagcaatggtttttgccatagtg |
4218139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 4215672 - 4215476
Alignment:
| Q |
1 |
ccctcagcactatagccattcaaaatcgccgcaacaaggagaaccaaaacaagtgaagcagtggattttgccatagtgtaagtatgaatgagta-tttta |
99 |
Q |
| |
|
|||||||||| ||| ||||||||||| || |||||| |||| ||||||||| |||||||||| |||||||||||| ||||||||||||| ||||| |
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| T |
4215672 |
ccctcagcacaataaccattcaaaattgcaacaacaaagagagccaaaacaaatgaagcagtgatttttgccatagt----gtatgaatgagtattttta |
4215577 |
T |
|
| Q |
100 |
ttttcctcttgtcgatggatattgttttgcaatggaatacaattgtctccaaaccactccaatttatagaactatatgatttccttaaatgagaagtgaa |
199 |
Q |
| |
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|||| || | || || |||||| || ||||||| ||||| || || | | ||||||||||||| |||| |||||||||||||||||||||||| |
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| T |
4215576 |
tttttcttt-----attgagtttgtttagc-atggaatgaaattggcttcatatgaatccaatttatagatctat-tgatttccttaaatgagaagtgaa |
4215484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 207
Target Start/End: Complemental strand, 4053902 - 4053850
Alignment:
| Q |
154 |
cactccaatttatagaactatatgatttccttaaatgagaagtgaatgaattaa |
207 |
Q |
| |
|
||||||||||||||| ||||| ||||| ||||||||||||||||||| |||||| |
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|
| T |
4053902 |
cactccaatttataggactat-tgattaccttaaatgagaagtgaatcaattaa |
4053850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 3916312 - 3916376
Alignment:
| Q |
19 |
ttcaaaatcgccgcaacaaggagaaccaaaacaagtgaagcag---tggattttgccatagtgta |
80 |
Q |
| |
|
|||| |||||||| |||||||||||| |||||||||||| ||| ||| ||||||||||||||| |
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|
| T |
3916312 |
ttcagaatcgccgtaacaaggagaactaaaacaagtgaaccagtgatggtttttgccatagtgta |
3916376 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 207
Target Start/End: Complemental strand, 4218135 - 4218047
Alignment:
| Q |
117 |
gatattgttttgcaatggaatacaattgtctccaaaccactccaatttatagaactatatgatttccttaaatgagaagtgaatgaattaa |
207 |
Q |
| |
|
|||||||||||||| ||||||| ||||| ||| | | |||||||||||||||| | | ||||||| ||||||| ||||||||||||||| |
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| T |
4218135 |
gatattgttttgca-tggaataaaattgactcaatagtactccaatttatagaattgt-tgatttctctaaatgataagtgaatgaattaa |
4218047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 207
Target Start/End: Original strand, 3925017 - 3925069
Alignment:
| Q |
154 |
cactccaatttatagaactatatgatttccttaaatgagaagtgaatgaattaa |
207 |
Q |
| |
|
||||||||||||||| |||| || ||| ||||||||||||||||||| |||||| |
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|
| T |
3925017 |
cactccaatttataggacta-attattaccttaaatgagaagtgaatcaattaa |
3925069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 34357177 - 34357100
Alignment:
| Q |
1 |
ccctcagcactatagccattcaaaatcgccgcaacaaggagaaccaaaacaagtgaagcagtggattttgccatagtg |
78 |
Q |
| |
|
|||||||||| ||||||||||| || || |||| |||| ||| | ||||||||||||| ||| ||||||||||||| |
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| T |
34357177 |
ccctcagcaccatagccattcagcattgcaacaactaggaaaactagaacaagtgaagcaatggtttttgccatagtg |
34357100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 203
Target Start/End: Complemental strand, 4223743 - 4223700
Alignment:
| Q |
159 |
caatttatagaactatatgatttccttaaatgagaagtgaatgaa |
203 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||||||||||| |
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| T |
4223743 |
caatttatagaacta-atattttccttaaatgagaagtgaatgaa |
4223700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 160 - 206
Target Start/End: Original strand, 11952603 - 11952648
Alignment:
| Q |
160 |
aatttatagaactatatgatttccttaaatgagaagtgaatgaatta |
206 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
11952603 |
aatttatagaactag-tgatttccttaaatgagaagtgaatgaatta |
11952648 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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