View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3918_high_22 (Length: 570)
Name: NF3918_high_22
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_high_22 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 471; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 12 - 559
Target Start/End: Original strand, 24564129 - 24564674
Alignment:
| Q |
12 |
tcatcatcttccaatcgctctattgcaaagcaagaaaccaaagagaaggcaatatatgaacatgaagtggggtaaaatttaggtagtggacaaaagaaag |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24564129 |
tcatcatcttccaatcgctctattgcaaagcaagaaaccaaagagaaggcaatatatgaacatgaagtggggtaaaatttaggtagtggacaaaagaaag |
24564228 |
T |
|
| Q |
112 |
ttttatttctgaaagcaatagtaaattacttcaacgtgactttgttacaacnnnnnnnntcaatgtgattaagacatgaaatgatcattgcagtttagaa |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
24564229 |
ttttatttctgaaagcaatagtaaattacttcaacgtgactttgttacaacaaaaaaa-tcaatgtgattaagacatgaaatgatcgttgcagtttagaa |
24564327 |
T |
|
| Q |
212 |
aggccatatggccccttaacttagctgactaatttaaatgtatatttgcgcagaccaagttactcaatgaatatggtttggaatgggtattaaatgtatt |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24564328 |
aggccatatggccccttaacttagctgactaatttaaatgtatatttgcgcagaccaagttactcaatgaatatggtttggaatgggtattaaatgtatt |
24564427 |
T |
|
| Q |
312 |
agcatgtataaagaatcggaatatacacagagacactaacatctgaacaccgacaattattttaaaaaataatataattcaatataatcacatgtatcta |
411 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
24564428 |
ggcatgtataaagcatcggaatatacacagagacactaacatctgaacaccgacaattattttaaaaaataatataattcaatgtaatcacatgtatcta |
24564527 |
T |
|
| Q |
412 |
tatcttgtaggcgacgaatacggggacgtatcaaacaccaaaacacgcctatgattataagcgtcgatgacacataaattagtattgcaattcaccaaat |
511 |
Q |
| |
|
||| |||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
24564528 |
tattttgtaggcgacgaatacgggaacgtatcagacacc-aaacacgcctatgattataagcgtcgatgccacataaattagtattgcaattcaccaaat |
24564626 |
T |
|
| Q |
512 |
taaaattacattcacttcaattgatataaggaagtcccagtataatct |
559 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
24564627 |
gaaaattacattcacttcaattgatataaggaagtcccagtagaatct |
24564674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 181 - 548
Target Start/End: Original strand, 9800524 - 9800890
Alignment:
| Q |
181 |
taagacatgaaatgatcattgcagtttagaaaggccatatggccccttaacttagctgactaatttaaatgtatatttgcgcagaccaagttactcaatg |
280 |
Q |
| |
|
|||| |||| ||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
9800524 |
taagccatgtaatgatcattgcaattcaaaaaggccatatggccccttaacttagctgactaatttaaatgtatatttgtgcccaccaagttactcaatg |
9800623 |
T |
|
| Q |
281 |
aatatggtttggaatgggtattaaatgtattagcatgtataaagaatcggaatatacacagagacactaacatctgaacaccgacaattattttaaaaaa |
380 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||| ||| | ||||||| ||||||||||||||||||| ||||| ||||| ||||||||| |
|
|
| T |
9800624 |
aatatggttatgaatgggtattaaatgtattagcatgtataaagcatcagcatatacatagagacactaacatctgaataccgataatta-tttaaaaaa |
9800722 |
T |
|
| Q |
381 |
taatataattcaatataatcacatgtatctatatcttgtaggcgacgaatacggggacgtatcaaacaccaaaacacgcctatgatt-ataagcgtcgat |
479 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||| || | ||||||| ||||| ||| | ||||| |||||||||||||||| |||||| ||||| |
|
|
| T |
9800723 |
taatataattcaatctattcacatgtatctatatcttgtcggtgtcgaatactgggacatatgagacacc-aaacacgcctatgattaataagcttcgat |
9800821 |
T |
|
| Q |
480 |
gacacataaattagtattgcaattcaccaaattaaaattacattcacttcaattgatataaggaagtcc |
548 |
Q |
| |
|
| ||||||||||| ||||||||| ||||||| ||||||||||||| |||||||||||||||||||||| |
|
|
| T |
9800822 |
gctacataaattagcattgcaatttaccaaatgaaaattacattcatttcaattgatataaggaagtcc |
9800890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 16 - 161
Target Start/End: Original strand, 9799042 - 9799190
Alignment:
| Q |
16 |
catcttccaatcgctc-tattgcaaagcaagaaaccaaagagaaggcaatatatgaacatgaagt--ggggtaaaatttaggtagtggacaaaagaaagt |
112 |
Q |
| |
|
|||||||| |||||| ||||||||||||||| ||||||||||| |||| |||||||||||||| |||||||||| ||| || |||| |||||||| |
|
|
| T |
9799042 |
catcttccggtcgctcatattgcaaagcaagataccaaagagaaagcaacatatgaacatgaagccgggggtaaaatgtagctactggatgaaagaaaga |
9799141 |
T |
|
| Q |
113 |
tttatttctgaaagcaatagtaaattacttcaacgtgactttgttacaa |
161 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
9799142 |
tttatttctgaaagcaacagtaaattaaatcaacgtgactttgttacaa |
9799190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 35 - 390
Target Start/End: Complemental strand, 45535313 - 45534957
Alignment:
| Q |
35 |
tgcaaagcaagaaaccaaagagaaggcaatatatgaacatgaagtggggtaaaatttaggtagtggacaaaagaaagttttatttctgaaagcaatagta |
134 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| || |||| |||||||||||||| ||||||||| |||||| |
|
|
| T |
45535313 |
tgcaaagcaagaaaccaaagagaaggcaatatatgaacatgaagcggggtaaaatgtagctaatggataaaagaaagttttaattctgaaagtaatagtt |
45535214 |
T |
|
| Q |
135 |
aattacttcaacgtgactttgttacaacnnnnnnnn-tcaatgtgattaagacatgaaatgatcattgcagtttagaaaggccatatggccccttaactt |
233 |
Q |
| |
|
||||| |||| |||||||||||||||| |||||| |||||||| ||| |||||||||||||||| |||||||||||| ||||||||||||| |
|
|
| T |
45535213 |
aattaaatcaatgtgactttgttacaacaaaaaaaaatcaatgcgattaagagatgtaatgatcattgcagttgagaaaggccatacggccccttaactt |
45535114 |
T |
|
| Q |
234 |
agctgactaatttaaatgtatatttgcgcagaccaagttactcaatgaatatggtttggaatgggtattaaatgtattagcatgtataaagaatcggaat |
333 |
Q |
| |
|
|||| ||||||||||||||||| ||||||| ||||||||||||| ||||| ||||| ||| ||||| ||| ||||||||||||||||||| | | || |
|
|
| T |
45535113 |
agctaactaatttaaatgtatagttgcgcacaccaagttactcattgaatctggttaggactgggtgctaagtgtattagcatgtataaagcaacaacat |
45535014 |
T |
|
| Q |
334 |
atacacagagacactaacatctgaacaccgacaattattttaaaaaataatataatt |
390 |
Q |
| |
|
||||| |||||||||||||| ||||||| || ||||||||||||||||||||||||| |
|
|
| T |
45535013 |
atacatagagacactaacatgtgaacactgataattattttaaaaaataatataatt |
45534957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 34 - 531
Target Start/End: Original strand, 44338195 - 44338689
Alignment:
| Q |
34 |
ttgcaaagcaagaaaccaaagagaaggcaatatatgaacatgaagtggggtaaaatttaggtagtggacaaaagaaagttttatttctgaaagcaatagt |
133 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||||||||||| |||||||| |||||| | || |||| |||||||||||||||||||||||| | |
|
|
| T |
44338195 |
ttgcaaagcaagaaatcaaagagaaggcaatat--gaacatgaagtagggtaaaaagtaggtaattgataaaataaagttttatttctgaaagcaataat |
44338292 |
T |
|
| Q |
134 |
aaattacttcaacgtgactttgttacaacnnnnnnnntcaatgtgattaagacatgaaatgatcattgcagtttagaaaggccatatggccccttaactt |
233 |
Q |
| |
|
|||||| ||||||||||||||| ||| |||||||| |||| ||| |||||||| ||||||| |||||||||||||||| |||||| || |
|
|
| T |
44338293 |
aaattaaatcaacgtgactttgt---aaccaaaaaaacaaatgtgatcaagagatgtaatgatcactgcagttcagaaaggccatatggctccttaaatt |
44338389 |
T |
|
| Q |
234 |
agctgactaatttaaatgtatatttgcgcagaccaagttactcaatg-aatatggtttgg-aatgggtattaaatgtattagcatgtataaagaatcgga |
331 |
Q |
| |
|
|| ||||||||||||| ||||||||||||| ||||||||| |||||| || |||||| || ||||| ||||||||||||||||||||||||| ||| |
|
|
| T |
44338390 |
agttgactaatttaaaggtatatttgcgcacaccaagttagtcaatgaaacatggttaggaaatggctattaaatgtattagcatgtataaaacgtcgac |
44338489 |
T |
|
| Q |
332 |
atatacacagagacactaacatctgaacaccgacaattattttaaaaaataatataattcaatataatcacatgtatctatatcttgtaggcgacgaata |
431 |
Q |
| |
|
|||||| |||||||| |||||| |||||| |||||||| ||| | |||||| | |||| |||||||||| ||||||||||||| ||| | |||||| |
|
|
| T |
44338490 |
atatacccagagacattaacatgtgaacaaagacaatta-tttgagaaataacacaattaaatataatcatatgtatctatatcatgtcgatctcgaata |
44338588 |
T |
|
| Q |
432 |
cggggacgtatcaaacac-caaaacacgcctatgattataagcgtcgatgacacataaattagtattgcaattcaccaaattaaaattacattcacttca |
530 |
Q |
| |
|
||||||| || |||| | | |||| | |||||| |||||| | |||| ||||||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
44338589 |
ttgggacgtttcggacacgctagacacacatatgataataagcattgatgctacataaattagcattgcaattcaccaaatgaaaattacattcacttca |
44338688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 426 - 541
Target Start/End: Complemental strand, 45534943 - 45534829
Alignment:
| Q |
426 |
cgaatacggggacgtatcaaacaccaaaacacgcctatgattataagcgtcgatgacacataaattagtattgcaattcaccaaattaaaattacattca |
525 |
Q |
| |
|
||||||||||||||||| | |||||||| || ||||||||||||||| ||||| | ||||||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
45534943 |
cgaatacggggacgtattagacaccaaa-catgcctatgattataagtgtcgacgctacataaattagcattgcaattcaccaaataaaaattacattca |
45534845 |
T |
|
| Q |
526 |
cttcaattgatataag |
541 |
Q |
| |
|
|||||||||| ||||| |
|
|
| T |
45534844 |
cttcaattgacataag |
45534829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 373 - 409
Target Start/End: Original strand, 34745205 - 34745241
Alignment:
| Q |
373 |
ttaaaaaataatataattcaatataatcacatgtatc |
409 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
34745205 |
ttaaaaaataacataattcaatataatcacatgtatc |
34745241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 406
Target Start/End: Original strand, 29519195 - 29519244
Alignment:
| Q |
357 |
aacaccgacaattattttaaaaaataatataattcaatataatcacatgt |
406 |
Q |
| |
|
|||||||| ||| |||||||||||| |||||||||||| |||| |||||| |
|
|
| T |
29519195 |
aacaccgataataattttaaaaaatcatataattcaatgtaataacatgt |
29519244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 483 - 538
Target Start/End: Original strand, 23095791 - 23095846
Alignment:
| Q |
483 |
acataaattagtattgcaattcaccaaattaaaattacattcacttcaattgatat |
538 |
Q |
| |
|
||||||||||| ||||||||| ||||||| |||||||| |||||| || ||||||| |
|
|
| T |
23095791 |
acataaattagcattgcaatttaccaaatgaaaattaccttcactacagttgatat |
23095846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 370 - 410
Target Start/End: Original strand, 19679993 - 19680033
Alignment:
| Q |
370 |
attttaaaaaataatataattcaatataatcacatgtatct |
410 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||| |||| |
|
|
| T |
19679993 |
attttaaaaaataacataattgaatataatcacatgcatct |
19680033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University