View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_high_223 (Length: 218)
Name: NF3918_high_223
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_high_223 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 5013495 - 5013279
Alignment:
| Q |
1 |
cgacattgatacgcctcgatacgttcctatatgcgtatcaaataagtatcggacaattgatatttattcatttttnnnnnnntgaccgatacgtgttgaa |
100 |
Q |
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| T |
5013495 |
cgacattgatacgcctcgatacgttcctatatgcgtatcagataagtatcggacaattaatatttattcatttaaaaaaaaatgattgatacgtgttaaa |
5013396 |
T |
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| Q |
101 |
tacggctaacttgtaatccgatacggctgaataaaccgataatttcttaataaaaacaatgaagaataaattttaacnnnnnnnnnggccatacagcata |
200 |
Q |
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| T |
5013395 |
tacggctaacttgtaatccgatacggctgaataaaccgataatttcttaataaaaacaatgaagaataaattttaac-aaaaaaaaggccatacagcata |
5013297 |
T |
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| Q |
201 |
gggcactagattatagaa |
218 |
Q |
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| T |
5013296 |
gggcactagattatagaa |
5013279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 121
Target Start/End: Complemental strand, 19928211 - 19928173
Alignment:
| Q |
83 |
tgaccgatacgtgttgaatacggctaacttgtaatccga |
121 |
Q |
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| T |
19928211 |
tgaccgatacgtgttgaatacgactaacttgtactccga |
19928173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 68
Target Start/End: Original strand, 30947516 - 30947576
Alignment:
| Q |
8 |
gatacgcctcgatacgttcctatatgcgtatcaaataagtatcggacaattgatatttatt |
68 |
Q |
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| T |
30947516 |
gatacgccccgatacgttccgatacgggtatcgaaaaagtatcgggcaattaatatttatt |
30947576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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