View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_high_228 (Length: 210)
Name: NF3918_high_228
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_high_228 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 1e-92; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 31 - 210
Target Start/End: Complemental strand, 33251674 - 33251495
Alignment:
| Q |
31 |
atcattatagagtaaaaacacttcaaaggaactaacatgtttttaatatagggggaaatgacactaagtaagtgatgtttatgtttataggaaacaaagg |
130 |
Q |
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| T |
33251674 |
atcattatagagttaaaacacttcaaaggaactaacatgtttttaatatagggggaaatgacactaagtaagtgatgtttatgtttataggaaacaaagg |
33251575 |
T |
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| Q |
131 |
tttgagagcgtaaccaagaatctgaaggtgacaagagtgttctctactttggtcgaagagatgaaagtaataaatggtgg |
210 |
Q |
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| T |
33251574 |
tttgagagagtaaccaagaatctgaaggtgacaagagtgttctctactttggtcgaagagatgaaagtaataaatggtgg |
33251495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 31 - 210
Target Start/End: Complemental strand, 33271846 - 33271667
Alignment:
| Q |
31 |
atcattatagagtaaaaacacttcaaaggaactaacatgtttttaatatagggggaaatgacactaagtaagtgatgtttatgtttataggaaacaaagg |
130 |
Q |
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| T |
33271846 |
atcattatagagttaaaacacttcaaaggaactaacatgtttttaatatagggggaaatgacactaagtaagtgatgtttatgtttataggaaacaaagg |
33271747 |
T |
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| Q |
131 |
tttgagagcgtaaccaagaatctgaaggtgacaagagtgttctctactttggtcgaagagatgaaagtaataaatggtgg |
210 |
Q |
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| T |
33271746 |
tttgagagagtaaccaagaatctgaaggtgacaagagtgttctctactttggtcgaagagatgaaagtaataaatggtgg |
33271667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 46 - 196
Target Start/End: Complemental strand, 33303496 - 33303346
Alignment:
| Q |
46 |
aaacacttcaaaggaactaacatgtttttaatatagggggaaatgacactaagtaagtgatgtttatgtttataggaaacaaaggtttgagagcgtaacc |
145 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||| |
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| T |
33303496 |
aaacacttcaaaggaactaacaagtttttaatatagggggaaatgacactaagtaagtgatgtatatgtctataggaaacaaaggtttgagagagtaacc |
33303397 |
T |
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| Q |
146 |
aagaatctgaaggtgacaagagtgttctctactttggtcgaagagatgaaa |
196 |
Q |
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| T |
33303396 |
aagaatctgaaggtgacaagagtgttctctactttggtagaagagttgaaa |
33303346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 110 - 204
Target Start/End: Complemental strand, 33311367 - 33311273
Alignment:
| Q |
110 |
tatgtttataggaaacaaaggtttgagagcgtaaccaagaatctgaaggtgacaagagtgttctctactttggtcgaagagatgaaagtaataaa |
204 |
Q |
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| T |
33311367 |
tatgtttacagggaacacagatttaagagagtagcaaagaatctaaaggtgacaagagttttctctacattagtggaagagattaaagcaataaa |
33311273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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