View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_high_231 (Length: 206)
Name: NF3918_high_231
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_high_231 |
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Alignment Details
Target: chr8 (Bit Score: 162; Significance: 1e-86; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 21 - 190
Target Start/End: Original strand, 31651277 - 31651446
Alignment:
| Q |
21 |
gaagttttagaagtgaggcagatttttaaatttagaatatcagttttaacattatatgcttatattgtttaattatagttcagggttaatcccctaaata |
120 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
31651277 |
gaagttttagaagtgaggcagatttttaaacttagaatatcagttttaacattatatgcttatactgtttaattatagttcagggttaatcccctaaata |
31651376 |
T |
|
| Q |
121 |
tagttttaatgttacaaatttccatttcctaaatgctaaggctaagctgattgatctgagcagacaaaag |
190 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31651377 |
tagttttaatgttacaaatttccatttcctaaatgctaaggctaagctgattgatctgagcagacaaaag |
31651446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 81 - 190
Target Start/End: Original strand, 31656112 - 31656220
Alignment:
| Q |
81 |
tatattgtttaattatagttcagggttaatcccctaaatatagttttaatgttacaaatttccatttcctaaatgctaaggctaagctgattgatctgag |
180 |
Q |
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|||||||| |||| |||||||| ||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |
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| T |
31656112 |
tatattgtgtaatcatagttcaaggt-aggcccctaaatatagttttaatgttacaagtttccatttcctaaatgctaaggctaaactgattgatctgag |
31656210 |
T |
|
| Q |
181 |
cagacaaaag |
190 |
Q |
| |
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|||||||||| |
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| T |
31656211 |
cagacaaaag |
31656220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 106 - 169
Target Start/End: Complemental strand, 34212367 - 34212304
Alignment:
| Q |
106 |
ttaatcccctaaatatagttttaatgttacaaatttccatttcctaaatgctaaggctaagctg |
169 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
34212367 |
ttaatcccctaaatatagttttaatgttacaaatttccattttctaaatgctaaggctaagctg |
34212304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 85 - 188
Target Start/End: Original strand, 31629739 - 31629846
Alignment:
| Q |
85 |
ttgtttaattatagttcagggttaatcccctaa-atatagttttaatgttacaa-atttccatttcctaaatg-ctaaggc-taagctgattgatctgag |
180 |
Q |
| |
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||||||||||| |||||| ||||||| |||||| ||||| | |||||||||||| |||||||||| ||||| ||||||| | | ||||||||||| || |
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| T |
31629739 |
ttgtttaattaaagttcaaggttaattccctaatatatactattaatgttacaatgcttccatttcccaaatgcctaaggctttatctgattgatctaag |
31629838 |
T |
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| Q |
181 |
cagacaaa |
188 |
Q |
| |
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|||||||| |
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| T |
31629839 |
cagacaaa |
31629846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 190
Target Start/End: Original strand, 31645987 - 31646031
Alignment:
| Q |
146 |
ttcctaaatgctaaggctaagctgattgatctgagcagacaaaag |
190 |
Q |
| |
|
|||| |||| |||||||| ||||||||||||| |||||||||||| |
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| T |
31645987 |
ttcccaaatactaaggcttagctgattgatctaagcagacaaaag |
31646031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 25 - 169
Target Start/End: Complemental strand, 21452518 - 21452366
Alignment:
| Q |
25 |
ttttagaagtgaggcagatttttaaatttagaatatcagttttaacattatatgcttatat--tgtttaattatagttcagggttaatc------cccta |
116 |
Q |
| |
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||||||||||||||| || ||||||| |||||||||||||||||||||||| || |||||| ||| ||| ||||||||||||||||| ||||| |
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| T |
21452518 |
ttttagaagtgaggctgagttttaaacttagaatatcagttttaacattatttgtttatatattgtgaaatcatagttcagggttaatcttaatccccta |
21452419 |
T |
|
| Q |
117 |
aatatagttttaatgttacaaatttccatttcctaaatgctaaggctaagctg |
169 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21452418 |
aatacagttttaatgttacaaatttccatttcctaaatgctaaggctaagctg |
21452366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 25 - 169
Target Start/End: Complemental strand, 12002668 - 12002516
Alignment:
| Q |
25 |
ttttagaagtgaggcagatttttaaatttagaatatcagttttaacattatatgcttatat--tgtttaattatagttcagggttaatc------cccta |
116 |
Q |
| |
|
||||||||| ||||| || ||||||| ||| |||||||||||||||||||| || |||||| ||| ||| |||||||| |||||||| ||||| |
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| T |
12002668 |
ttttagaagcgaggctgagttttaaacttaaaatatcagttttaacattatttgtttatatattgtgaaatcatagttcatggttaatcttaatccccta |
12002569 |
T |
|
| Q |
117 |
aatatagttttaatgttacaaatttccatttcctaaatgctaaggctaagctg |
169 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12002568 |
aatatagttttaatgttacaaatttccatttcctaaatgctaaggctaagctg |
12002516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 13 - 169
Target Start/End: Original strand, 12758750 - 12758914
Alignment:
| Q |
13 |
aacctgtggaagttttagaagtgaggcagatttttaaatttagaatatcagttttaacattatatgcttatat--tgtttaattatagttcagggttaa- |
109 |
Q |
| |
|
||||||| ||| ||||| ||| ||||| || ||||||| |||||||||||||||||||||||| || |||||| ||| ||| ||||||||||||||| |
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| T |
12758750 |
aacctgtagaaattttataagcgaggctgagttttaaacttagaatatcagttttaacattatttgtttatatattgtgaaatcatagttcagggttaat |
12758849 |
T |
|
| Q |
110 |
-----tcccctaaatatagttttaatgttacaaatttccatttcctaaatgctaaggctaagctg |
169 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12758850 |
cttaatcccctaaatatagttttaatgttacaaatttccatttcctaaatgctaaggctaagctg |
12758914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 25 - 169
Target Start/End: Original strand, 32398047 - 32398199
Alignment:
| Q |
25 |
ttttagaagtgaggcagatttttaaatttagaatatcagttttaacattatatgcttatat--tgtttaattatagttcagggttaa------tccccta |
116 |
Q |
| |
|
||||||||| ||||| || ||||||| |||||||||||||||||||||||| || |||||| ||| ||| ||||||||||||||| ||||||| |
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| T |
32398047 |
ttttagaagcgaggctgagttttaaacttagaatatcagttttaacattatttgtttatatattgtgaaatcatagttcagggttaatcttaatccccta |
32398146 |
T |
|
| Q |
117 |
aatatagttttaatgttacaaatttccatttcctaaatgctaaggctaagctg |
169 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
32398147 |
aatatagttttaatgttacgaatttccatttcctaaatgctaaggctaagctg |
32398199 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 106 - 169
Target Start/End: Complemental strand, 14653951 - 14653888
Alignment:
| Q |
106 |
ttaatcccctaaatatagttttaatgttacaaatttccatttcctaaatgctaaggctaagctg |
169 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
14653951 |
ttaatcccctaaatatagttttaatgttacaaatttctattttctaaatgctaaggctaagctg |
14653888 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 25 - 169
Target Start/End: Complemental strand, 4329486 - 4329334
Alignment:
| Q |
25 |
ttttagaagtgaggcagatttttaaatttagaatatcagttttaacattatatgcttatat--tgtttaattatagttcagggttaatc------cccta |
116 |
Q |
| |
|
||||||||| ||||| || ||||||| |||||||||||||||||||||||| || |||||| ||| ||| ||||||||||||||||| ||||| |
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|
| T |
4329486 |
ttttagaagcgaggctgagttttaaacttagaatatcagttttaacattatttgtttatatattgtgaaatcatagttcagggttaatcttaatccccta |
4329387 |
T |
|
| Q |
117 |
aatatagttttaatgttacaaatttccatttcctaaatgctaaggctaagctg |
169 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4329386 |
aatatagttttaatgttacaaatttccatttcctaaatgctaaggctaagctg |
4329334 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 9e-26; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 106 - 169
Target Start/End: Original strand, 20921100 - 20921163
Alignment:
| Q |
106 |
ttaatcccctaaatatagttttaatgttacaaatttccatttcctaaatgctaaggctaagctg |
169 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
20921100 |
ttaatcccctaaatatagttttaatattacaaatttccatttcctaaatgctaaggctaagctg |
20921163 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 107
Target Start/End: Original strand, 20917424 - 20917520
Alignment:
| Q |
13 |
aacctgtggaagttttagaagtgaggcagatttttaaatttagaatatcagttttaacattatatgct--tatattgtttaattatagttcagggtt |
107 |
Q |
| |
|
||||||| ||| ||||||||| ||||| || ||||||| ||||||||||| |||||||||||| || | |||||||| ||| ||||||||||||| |
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|
| T |
20917424 |
aacctgtagaaattttagaagcgaggctgagttttaaacttagaatatcacttttaacattatttgtttatatattgtgaaatcatagttcagggtt |
20917520 |
T |
|
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