View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_high_25 (Length: 555)
Name: NF3918_high_25
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_high_25 |
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Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 312 - 537
Target Start/End: Original strand, 38824507 - 38824723
Alignment:
| Q |
312 |
aaaaataatttccaattaacacatatctttatttacaaagcatttaaaaaagtagtaaacatgaaatcgaagggaacattgttgagtgacccaattggta |
411 |
Q |
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| T |
38824507 |
aaaaattatttccaattaacacatatctttatttacaaagcatttaaaaaagtagtaaacatgaaatcgaagggaacattgttgagtgacccaattggta |
38824606 |
T |
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| Q |
412 |
aaattgagagaataacaaattttttaacctttggaaggtgaaatgagagaaccacagtagtataagtagagaaatttgtatgtatatccaagtctatgta |
511 |
Q |
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| T |
38824607 |
aaattgagagaataac---------aacctttggaaggtgaaatgagagaaccacagtagtataagtagagaaatttgtatgtatatccaagtctatgta |
38824697 |
T |
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| Q |
512 |
cggtaacacaatggagatgacagaac |
537 |
Q |
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| T |
38824698 |
cgataacacaatggagatgacagaac |
38824723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 14 - 195
Target Start/End: Original strand, 38824184 - 38824365
Alignment:
| Q |
14 |
aatatatgaaaagtaaaatatactagcttctatccattgtgacagtaaaacaacatagctgcaaaaatagtgcaatggatagacaaattcatcatattcg |
113 |
Q |
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| T |
38824184 |
aatatatgaaaagtaaaatatactagcttctatccattgtgacagtaaagcaacatagctgcaaaaatagtgcaatggatagacaaattcatcatattcg |
38824283 |
T |
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| Q |
114 |
ttctatcaaaatccatactaaaatagaaaggttttgatgagagtaattttcaccaatacagcacaaaacattgcaggcaggc |
195 |
Q |
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| T |
38824284 |
tcctatcaaaatccatactaaaatagaaaggttttgatgagagtaattttcaccaatacagcacaaaacattgcagacaggc |
38824365 |
T |
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