View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_high_27 (Length: 544)
Name: NF3918_high_27
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_high_27 |
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Alignment Details
Target: chr5 (Bit Score: 505; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 3 - 527
Target Start/End: Original strand, 10223725 - 10224249
Alignment:
| Q |
3 |
cagacaccacttcaacaacctctcctccttccaaccaccaacctcaccttcttcgtttacccctccgtcgtaaccccaaacccaaaaacctctctctcat |
102 |
Q |
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| T |
10223725 |
cagacaccacttcaacaacctctcctccttccaaccaccaacctcaccttcttcgtttacccctccgtcgtaaccccaaacccaaaaacctctctctcat |
10223824 |
T |
|
| Q |
103 |
tcacccttcttcacaacctattacccctccaaagaagagcaagcgaagaagaaaatgtgattcaacttcacacatcttacccttaatggatgctcttcac |
202 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
10223825 |
tcacccttcttcacaacctattactcctccaaagaagagcaagcgaagaagaaaatgtgatacaacttcacacatcttacccttaatggatgctcttcac |
10223924 |
T |
|
| Q |
203 |
tttcccataaccattgatatttacacctcattggtcaaagaatgtactcttcccaccgacccagaaactgctattgagttgcatacacaaatcataacta |
302 |
Q |
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| T |
10223925 |
tttcccataaccattgatatttacacctcattggtcaaagaatgtactctttccaccgacccagaaactgctattgagttgcatacacaaatcataacta |
10224024 |
T |
|
| Q |
303 |
gaggcatcgaactgccattgacattgctcaatcggattctgattatgtttgtttcatgcggtttattggagaatgcacgccgtgtgtttgatgtaatgtc |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
10224025 |
gaggcatcgaactgccattgacattgctcaatcggattctgattatgtttgtttcatgcggtttattggagaatgcacgccgagtgtttgatgtaatgtc |
10224124 |
T |
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| Q |
403 |
tgtgagggattttcattcttgggctaccttgtttgttgcttattatgaaaatggtgagtatgagaatgctatagatgtttttgttagtatgttatgtcaa |
502 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10224125 |
tgtgagggattttcattcttgggctaccttgtttgtttcttattatgaaaatggtgagtatgagaatgctatagatgtttttgttagtatgttatgtcaa |
10224224 |
T |
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| Q |
503 |
ttggatgtgatggggttttcttttc |
527 |
Q |
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||||||||||||||||||||||||| |
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| T |
10224225 |
ttggatgtgatggggttttcttttc |
10224249 |
T |
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