View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_high_35 (Length: 498)
Name: NF3918_high_35
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_high_35 |
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Alignment Details
Target: chr3 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 22 - 487
Target Start/End: Complemental strand, 52823789 - 52823324
Alignment:
| Q |
22 |
ggtcgcaggtggagcataaggcagcttcatcggcggtgcaaaataaagaagcctgccgtttgttacagacgtcgcactggatcttcataatatcaaatgt |
121 |
Q |
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| T |
52823789 |
ggtcgcaggtggagcataaggcagcttcatcggcggtgcagaataaagaagcctgccgtttgttacagacgtcgcactggatcttcataatatcaaatgt |
52823690 |
T |
|
| Q |
122 |
acgtatgatactgaatcattcacttatttccctctgaatcttataataaatatctgaaccaaccatccaagacaagaaacaatgaagaagatggtgaccc |
221 |
Q |
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| T |
52823689 |
acgtatgatactgaatcattcacttatttccctctgaatcttataataaatatctgaaccaaccatccaagacaagaaacaatgaagaagatggtgaccc |
52823590 |
T |
|
| Q |
222 |
actgttaaatatatacataattgaattaaataatatatttgaacaccttaaattttatctctatttctcttatgaaatcatcaccctatcatatttatca |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52823589 |
actgttaaatatatacataattgaattaaataatatatttgaacaccttaaattttatctctatttctcttatgaaatcatcaccctatcatatttatca |
52823490 |
T |
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| Q |
322 |
cacaactctctcttatatctttctctcacaggttatattatacacacctaaacattgtctattgcgatagcatagtgcttgacttggttgtgttttgttt |
421 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52823489 |
cacaactctctcttatatctttctctcacaggttatattatacacacctaaacattgtctattgcgatagcatagtgcttgacttggttgtgttttgttt |
52823390 |
T |
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| Q |
422 |
ttaggtgcggtgttttatgttgggattatactgccgcatatttacgatgcttattttgtagttcat |
487 |
Q |
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| T |
52823389 |
ttaggcgcggtgttttatgttgggattatactgccgcatatttacgatgcctattttatatttcat |
52823324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 375 - 487
Target Start/End: Original strand, 25664249 - 25664360
Alignment:
| Q |
375 |
attgtctattgcgatagcatagtgcttgacttggttgtgttttgtttttaggtgcggtgttttatgttgggattatactgccgcatatttacgatgctta |
474 |
Q |
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||||||| |||| |||| ||||||||||||| | ||||||| ||||| || |||||||||||||||| ||| |||||||||||||||||||| || |
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| T |
25664249 |
attgtcttttgcagtagcttagtgcttgactttgctgtgtttcgttttctggat-ggtgttttatgttgggcttagactgccgcatatttacgatgtcta |
25664347 |
T |
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| Q |
475 |
ttttgtagttcat |
487 |
Q |
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||||||||||||| |
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| T |
25664348 |
ttttgtagttcat |
25664360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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