View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3918_high_36 (Length: 492)
Name: NF3918_high_36
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_high_36 |
 | |
|
| [»] scaffold0648 (1 HSPs) |
| | |
|
| [»] scaffold0640 (1 HSPs) |
| | |
|
| [»] scaffold0274 (2 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 34)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 19 - 474
Target Start/End: Complemental strand, 18166148 - 18165693
Alignment:
| Q |
19 |
gaaaggtcaatagttcgcctttctgggttaacatgatacacataatcttgacctttggtaaataaatcaacagtggtatcataccatgaatccacatgat |
118 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||| | | ||||| || |||| ||| |
|
|
| T |
18166148 |
gaaatgtcaatagttcgcctttccgggttaacatcatacacataatcttgacctttggtaaataaatcaattgtggcaggacgccatgcatacacacgat |
18166049 |
T |
|
| Q |
119 |
cagtatgcatttgagtcaagttgtagacgcaatgtggcaacgatcctgaaagtttgttatgtgcaaggtctaagtgaaacaaataggagagattgaatag |
218 |
Q |
| |
|
|||||| |||||| |||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |
|
|
| T |
18166048 |
cagtatccatttgtgtcaagttgtagacacaatgtggcaaagatcctgaaagtttgttattcgcaaggtctaagtgaaacaaattagagagattgaatat |
18165949 |
T |
|
| Q |
219 |
ttgttgcggaatactcccttcaaattggttagctctcaatatgaccacgtataagttttctgaaatcaaaattggtatggttccagaaaattcattttct |
318 |
Q |
| |
|
|||| | |||||| |||||||||||||||||||||||||||||||||| | ||| |||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18165948 |
ttgtggtggaatagtcccttcaaattggttagctctcaatatgaccacttctaacttttgtgaaatcaaaattggtatggttccagaaaattcattttct |
18165849 |
T |
|
| Q |
319 |
cccaagttcatgatttccaattgattaaaatcagaaaagtgcaatgaaacttcaccagatagcctattactccacaagttaatgtgatataaatttttca |
418 |
Q |
| |
|
||||||||||||||||||||||| || ||||| || ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
18165848 |
cccaagttcatgatttccaattggttcaaatcggagaagtgcaatgaaacttcaccaaatagcctattactccacaagctaatgtgatataaaattttca |
18165749 |
T |
|
| Q |
419 |
aattcttccaactatgtggaattgatgttgagaaggagttgtaagacaaatcaaca |
474 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||||||||| |||||||||||||| |
|
|
| T |
18165748 |
aattcttccaactatgtggaattgttcctgagaaggagttgaaagacaaatcaaca |
18165693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 53 - 473
Target Start/End: Complemental strand, 19465311 - 19464894
Alignment:
| Q |
53 |
gatacacataatcttgacctttggtaaataaatcaacagtggtatcataccatgaatccacatgatcagtatgcatttgagtcaagttgtagacgcaatg |
152 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| |||||| ||||||| || ||||||||||||| |||||||||||||||||| || || || |
|
|
| T |
19465311 |
gatacatataatcttgacctttggtaaataaatcaattgtggtaggataccatccataaacatgatcagtatccatttgagtcaagttgtaaacacagtg |
19465212 |
T |
|
| Q |
153 |
tggcaacgatcctgaaagtttgttatgtgcaaggtctaagtgaaacaaa-taggagagattgaatagttgttgcggaatactcccttcaaattggttagc |
251 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||||||||||||||||||| || | ||||| ||||||||| | |||||| ||||||||||||||||||| |
|
|
| T |
19465211 |
tggcaaagatcctgaaagtttgttatttgcaaggtctaagtgaaacaaaatatg-gagatcaaatagttgtggtggaatagtcccttcaaattggttagc |
19465113 |
T |
|
| Q |
252 |
tctcaatatgaccacgtataagttttctgaaatcaaaattggtatggttccagaaaattcattttctcccaagttcatgatttccaattgattaaaatca |
351 |
Q |
| |
|
||||||||||||||| | ||||| || ||||||||| || |||||||||||||||||||||||||| |||||||||||| |||||||||| || |||| | |
|
|
| T |
19465112 |
tctcaatatgaccacttctaagtcttgtgaaatcaagataggtatggttccagaaaattcattttcgcccaagttcatgttttccaattggttcaaatta |
19465013 |
T |
|
| Q |
352 |
gaaaagtgcaatgaaacttcaccagatagcctattactccacaagttaatgtgatataaatttttcaaattcttccaactatgtggaattgatgttgaga |
451 |
Q |
| |
|
|| |||||||| |||||||||||||||||||||||||||||||||||||||| || ||| | || ||||||||||||| |||||||| | ||||| |
|
|
| T |
19465012 |
gagaagtgcaacgaaacttcaccagatagcctattactccacaagttaatgtaatttaa---tcctaagttcttccaactatatggaattgttcctgaga |
19464916 |
T |
|
| Q |
452 |
aggagttgtaagacaaatcaac |
473 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
19464915 |
aggagttgtaagacaaatcaac |
19464894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 19 - 472
Target Start/End: Complemental strand, 17942946 - 17942493
Alignment:
| Q |
19 |
gaaaggtcaatagttcgcctttctgggttaacatgatacacataatcttgacctttggtaaataaatcaacagtggtatcataccatgaatccacatgat |
118 |
Q |
| |
|
||||||||||| |||||||| | ||| |||||| |||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||| |
|
|
| T |
17942946 |
gaaaggtcaatcgttcgcctgttcgggctaacataatacacgtaatcttgacctttggtaaataaaacaacagtggtaacataccatgaatccatatgat |
17942847 |
T |
|
| Q |
119 |
cagtatgcatttgagtcaagttgtagacgcaatgtggcaacgatcctgaaagtttgttatgtgcaaggtctaagtgaaacaaataggagagattgaatag |
218 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17942846 |
cagtatccatttgagtcaagttgtagacgcagtgtggcaaagatcctgaaagtttgttatttgcaaggtctaagtgaaacaaataggagagattgaatag |
17942747 |
T |
|
| Q |
219 |
ttgttgcggaatactcccttcaaattggttagctctcaatatgaccacgtataagttttctgaaatcaaaattggtatggttccagaaaattcattttct |
318 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||| ||| | ||||||||||||||| |||| ||||||||| |
|
|
| T |
17942746 |
ttgttgcggaatagtcccttcaaattggttagctctcaatatgaccacttgtaagttttgtgataagctgattggtatggttccaaaaaactcattttct |
17942647 |
T |
|
| Q |
319 |
cccaagttcatgatttccaattgattaaaatcagaaaagtgcaatgaaacttcaccagatagcctattactccacaagttaatgtgatataaatttttca |
418 |
Q |
| |
|
||||| ||||||| | |||| | || || |||| | ||| | |||||||||||| |||||||||||||| | ||| | | | | | | || |
|
|
| T |
17942646 |
cccaaattcatgaataacaatcgttttgaagcagagaggtgtgttagaacttcaccagacagcctattactccataggttcaagacttccagttctgaca |
17942547 |
T |
|
| Q |
419 |
aattcttccaactatgtggaattgatgttgagaaggagttgtaagacaaatcaa |
472 |
Q |
| |
|
| |||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
17942546 |
agttcttccaactatgtggaattgatcctgagaaggagttgtaagacaaatcaa |
17942493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 19 - 474
Target Start/End: Complemental strand, 19415176 - 19414721
Alignment:
| Q |
19 |
gaaaggtcaatagttcgcctttctgggttaacatgatacacataatcttgacctttggtaaataaatcaacagtggtatcataccatgaatccacatgat |
118 |
Q |
| |
|
|||||||||||||||||||| || || ||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||| || | |||| |
|
|
| T |
19415176 |
gaaaggtcaatagttcgcctatccggactaacatgatacacataatcttgacctttgataaataaatcaattgtggtagaataccataaacttaaatgaa |
19415077 |
T |
|
| Q |
119 |
cagtatgcatttgagtcaagttgtagacgcaatgtggcaacgatcctgaaagtttgttatgtgcaaggtctaagtgaaacaaataggagagattgaatag |
218 |
Q |
| |
|
|||| ||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
19415076 |
aagtaaccatatgagtcaagttgtagacgctgtgtggcaaagatcctgaaagtttgttatgtgcaaggtctaagtgaaacaaatcagagagattaaatag |
19414977 |
T |
|
| Q |
219 |
ttgttgcggaatactcccttcaaattggttagctctcaatatgaccacgtataagttttctgaaatcaaaattggtatggttccagaaaattcattttct |
318 |
Q |
| |
|
||| | |||||| ||||||||||| ||||| |||||||||||||||| | |||||| | ||| |||| ||||||||||||||| |||||||||||||| |
|
|
| T |
19414976 |
ctgtggtggaatagtcccttcaaatcggttatctctcaatatgaccacttctaagttctgtgacatcatgattggtatggttccataaaattcattttct |
19414877 |
T |
|
| Q |
319 |
cccaagttcatgatttccaattgattaaaatcagaaaagtgcaatgaaacttcaccagatagcctattactccacaagttaatgtgatataaatt-tttc |
417 |
Q |
| |
|
||||| ||||||| | ||||| || || |||| ||| ||| | ||||||||||||||||||||||||||||| ||| | | | | | || |||| |
|
|
| T |
19414876 |
cccaaattcatgactcttaattgcttccaaccagagcagtacaaaggaacttcaccagatagcctattactccacaggttcaag-actgtcagttctttc |
19414778 |
T |
|
| Q |
418 |
aaattcttccaactatgtggaattgatgttgagaaggagttgtaagacaaatcaaca |
474 |
Q |
| |
|
|| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
19414777 |
aagttcttccaactatgtggaattgatcctgagaaggagttgtaagacaaatcaaca |
19414721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 19 - 330
Target Start/End: Complemental strand, 18017014 - 18016703
Alignment:
| Q |
19 |
gaaaggtcaatagttcgcctttctgggttaacatgatacacataatcttgacctttggtaaataaatcaacagtggtatcataccatgaatccacatgat |
118 |
Q |
| |
|
|||||||||||||||||||| || |||||||||| | ||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
18017014 |
gaaaggtcaatagttcgcctatccgggttaacatcacacacataatattgacctttggtaaataaatcaatggtggtatcataccataaatccacatgat |
18016915 |
T |
|
| Q |
119 |
cagtatgcatttgagtcaagttgtagacgcaatgtggcaacgatcctgaaagtttgttatgtgcaaggtctaagtgaaacaaataggagagattgaatag |
218 |
Q |
| |
|
|||||| ||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
18016914 |
cagtatccatttgagtcaagttgtagacaaagtgtggcaaagatcctgaaagtttgttatgtgcaaggtctaagtgaaacaaataagagagattgaataa |
18016815 |
T |
|
| Q |
219 |
ttgttgcggaatactcccttcaaattggttagctctcaatatgaccacgtataagttttctgaaatcaaaattggtatggttccagaaaattcattttct |
318 |
Q |
| |
|
|||| | |||||| |||||||||||| || ||||||||||||||||| |||||||| ||| ||| | ||||||| |||||||||||||||||| | |
|
|
| T |
18016814 |
ttgtcgtggaataatcccttcaaatttattggctctcaatatgaccactcttaagttttgtgacatccctactggtatgtttccagaaaattcatttttt |
18016715 |
T |
|
| Q |
319 |
cccaagttcatg |
330 |
Q |
| |
|
|||||||||||| |
|
|
| T |
18016714 |
cccaagttcatg |
18016703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 19 - 472
Target Start/End: Original strand, 18872886 - 18873339
Alignment:
| Q |
19 |
gaaaggtcaatagttcgcctttctgggttaacatgatacacataatcttgacctttggtaaataaatcaacagtggtatcataccatgaatccacatgat |
118 |
Q |
| |
|
|||||||||||||||||||| | ||| || |||| | ||||||||||||||||||||||||| |||||||| || ||||||||||||||| || | || |
|
|
| T |
18872886 |
gaaaggtcaatagttcgcctatatggattgacatcaaacacataatcttgacctttggtaaacaaatcaacgatgttatcataccatgaattcaagtaat |
18872985 |
T |
|
| Q |
119 |
cagtatgcatttgagtcaagttgtagacgcaatgtggcaacgatcctgaaagtttgttatgtgcaaggtctaagtgaaacaaataggagagattgaatag |
218 |
Q |
| |
|
||||| ||||||||||||||||||||| || | |||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||| |
|
|
| T |
18872986 |
gagtatccatttgagtcaagttgtagacacagtttggcaaagatcctgaaagtttgttatgtgcaaggtccaagtgaaacaaattagagagattaaatag |
18873085 |
T |
|
| Q |
219 |
ttgttgcggaatactcccttcaaattggttagctctcaatatgaccacgtataagttttctgaaatcaaaattggtatggttccagaaaattcattttct |
318 |
Q |
| |
|
|||| | | |||| ||||||||||||||||||||||||||||||| || | || ||||| ||| |||| | ||||||| |||||||||||||||||||| |
|
|
| T |
18873086 |
ttgtggtgaaatattcccttcaaattggttagctctcaatatgactacttctaggttttgtgacatcatgaatggtatgtttccagaaaattcattttct |
18873185 |
T |
|
| Q |
319 |
cccaagttcatgatttccaattgattaaaatcagaaaagtgcaatgaaacttcaccagatagcctattactccacaagttaatgtgatataaatt-tttc |
417 |
Q |
| |
|
||||| |||| ||| | ||| || || | ||||| | ||| | ||||||||||||||||||||||||||||| ||| | | ||| | || |||| |
|
|
| T |
18873186 |
cccaaattcaagatctgcaactgtttccattcagagaggtgatcttgaacttcaccagatagcctattactccacaggttcaag-actatcagttctttc |
18873284 |
T |
|
| Q |
418 |
aaattcttccaactatgtggaattgatgttgagaaggagttgtaagacaaatcaa |
472 |
Q |
| |
|
|| |||||||||||||||||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
18873285 |
aagttcttccaactatgtggaattgatcctgagaaggaattgtaagacaaatcaa |
18873339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 19 - 475
Target Start/End: Complemental strand, 19376614 - 19376158
Alignment:
| Q |
19 |
gaaaggtcaatagttcgcctttctgggttaacatgatacacataatcttgacctttggtaaataaatcaacagtggtatcataccatgaatccacatgat |
118 |
Q |
| |
|
|||||||||||||||||||| || || ||||||| ||||||||| |||||||||||||||||||| |||| ||| || |||| |||||| | |||| |
|
|
| T |
19376614 |
gaaaggtcaatagttcgcctatccggcttaacatcatacacatattcttgacctttggtaaataactcaattgtgttaacataatatgaataaaaatgaa |
19376515 |
T |
|
| Q |
119 |
cagtatgcatttgagtcaagttgtagacgcaatgtggcaacgatcctgaaagtttgttatgtgcaaggtctaagtgaaacaaataggagagattgaatag |
218 |
Q |
| |
|
|||| ||| | |||||||||||||| ||| ||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
19376514 |
aagtaaccatattagtcaagttgtagatgcagtgtggaaaagatcctgaaagtttgttatgtgcaaggtctaagtgaaacaaataagagagattgaatag |
19376415 |
T |
|
| Q |
219 |
ttgttgcggaatactcccttcaaattggttagctctcaatatgaccacgtataagttttctgaaatcaaaattggtatggttccagaaaattcattttct |
318 |
Q |
| |
|
|||||| |||||| |||||||||||| ||||||||||||||||||| |||||||||| ||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
19376414 |
ttgttgtggaatagtcccttcaaatttattagctctcaatatgaccaaatataagttttgtgacatcttgattggtatggttccagaaaattcattttct |
19376315 |
T |
|
| Q |
319 |
cccaagttcatgatttccaattgattaaaatcagaaaagtgcaatgaaacttcaccagatagcctattactccacaagttaatgtgatataaatttttca |
418 |
Q |
| |
|
||||| |||| || || ||||||||| || |||| | ||| | ||||||||||||||||||||||||||| | ||| | | | || | | || |
|
|
| T |
19376314 |
cccaaattcaagaattgcaattgatttgaagcagagaggtgagctagaacttcaccagatagcctattactccataggttcaactctttcaattctgaca |
19376215 |
T |
|
| Q |
419 |
aattcttccaactatgtggaattgatgttgagaaggagttgtaagacaaatcaacat |
475 |
Q |
| |
|
| |||||||||||||||||||||||| |||||||||||| |||||| ||||||| |
|
|
| T |
19376214 |
agttcttccaactatgtggaattgatccagagaaggagttgaaagacacgtcaacat |
19376158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 19 - 470
Target Start/End: Complemental strand, 19354707 - 19354256
Alignment:
| Q |
19 |
gaaaggtcaatagttcgcctttctgggttaacatgatacacataatcttgacctttggtaaataaatcaacagtggtatcataccatgaatccacatgat |
118 |
Q |
| |
|
|||||||||||||||||||| || |||||||||| | ||||||||||||||||||||||||||||||||| ||||||| | |||| ||||||||||| |
|
|
| T |
19354707 |
gaaaggtcaatagttcgcctatccgggttaacatcagacacataatcttgacctttggtaaataaatcaatgatggtatcgtgccattcatccacatgat |
19354608 |
T |
|
| Q |
119 |
cagtatgcatttgagtcaagttgtagacgcaatgtggcaacgatcctgaaagtttgttatgtgcaaggtctaagtgaaacaaataggagagattgaatag |
218 |
Q |
| |
|
|||||| |||||||||| |||||| || || |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
19354607 |
cagtatcaatttgagtcatgttgtacacacagtgtggcaaagatcctgaaagtttgttatgtgcaaggtctaagtgaaacaaattagagagattaaatag |
19354508 |
T |
|
| Q |
219 |
ttgttgcggaatactcccttcaaattggttagctctcaatatgaccacgtataagttttctgaaatcaaaattggtatggttccagaaaattcattttct |
318 |
Q |
| |
|
|||||| || ||| |||||||||||||||| ||||||||||||||||| |||| || ||| || ||||||||||||||||||||||| || || |
|
|
| T |
19354507 |
ttgttgtgggatattcccttcaaattggttggctctcaatatgaccactgttaaggattgtgacattttgattggtatggttccagaaaattcgttagct |
19354408 |
T |
|
| Q |
319 |
cccaagttcatgatttccaattgattaaaatcagaaaagtgcaatgaaacttcaccagatagcctattactccacaagttaatgtgatataaatt-tttc |
417 |
Q |
| |
|
|||||||||||| |||| ||||| || | | | | | || || || ||| |||||||| | | |||||||||| | ||| | || ||| | || ||| |
|
|
| T |
19354407 |
cccaagttcatggtttctaattgtttcatagaaaataggtacactggaacatcaccagacaacttattactccataggttcaagt-ttatcagttctttg |
19354309 |
T |
|
| Q |
418 |
aaattcttccaactatgtggaattgatgttgagaaggagttgtaagacaaatc |
470 |
Q |
| |
|
| |||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
19354308 |
cagttcttccaactatgtggaattgatcctgagaaggagttgtaagacaaatc |
19354256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 19 - 473
Target Start/End: Complemental strand, 19352384 - 19351930
Alignment:
| Q |
19 |
gaaaggtcaatagttcgcctttctgggttaacatgatacacataatcttgacctttggtaaataaatcaacagtggtatcataccatgaatccacatgat |
118 |
Q |
| |
|
|||||||||| ||||||||| | |||||||||| | |||||||| ||||||||||||||||||||||| |||||| | |||||| || |||||||| |
|
|
| T |
19352384 |
gaaaggtcaacagttcgcctatgcgggttaacatcagtcacataatattgacctttggtaaataaatcaagggtggtagcgtaccattcattcacatgat |
19352285 |
T |
|
| Q |
119 |
cagtatgcatttgagtcaagttgtagacgcaatgtggcaacgatcctgaaagtttgttatgtgcaaggtctaagtgaaacaaataggagagattgaatag |
218 |
Q |
| |
|
|||||| ||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
19352284 |
cagtatccatttgagtcaagttgtagacaaagtgtggcaaagatcctgaaagtttgttatgtgcaaggtctaagtgaaacaaataagagagattgaataa |
19352185 |
T |
|
| Q |
219 |
ttgttgcggaatactcccttcaaattggttagctctcaatatgaccacgtataagttttctgaaatcaaaattggtatggttccagaaaattcattttct |
318 |
Q |
| |
|
|||||| |||||| |||||||||||| || ||||| ||||||||||| |||||||| ||| ||| | |||||| |||||||||||||||||||| |
|
|
| T |
19352184 |
ttgttgtggaataatcccttcaaatttattggctctaaatatgaccactactaagttttgtgacatccctaccggtatgtttccagaaaattcattttct |
19352085 |
T |
|
| Q |
319 |
cccaagttcatgatttccaattgattaaaatcagaaaagtgcaatgaaacttcaccagatagcctattactccacaagttaatgtgatataaatt-tttc |
417 |
Q |
| |
|
|||||||||||| | ||||||| || || | ||| | || |||| || ||| ||||| | | ||||| |||||| ||| ||| | | | || | | |
|
|
| T |
19352084 |
cccaagttcatggtctccaattctttcaagttagagatgtataatggaagttccccagacaacttattattccacaggttcatg-actctcagttctgac |
19351986 |
T |
|
| Q |
418 |
aaattcttccaactatgtggaattgatgttgagaaggagttgtaagacaaatcaac |
473 |
Q |
| |
|
|| |||||||||||||||||||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
19351985 |
aagttcttccaactatgtggaattgatcttgagaaggagttgtaagataaatcaac |
19351930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 132 - 466
Target Start/End: Complemental strand, 25463929 - 25463595
Alignment:
| Q |
132 |
agtcaagttgtagacgcaatgtggcaacgatcctgaaagtttgttatgtgcaaggtctaagtgaaacaaataggagagattgaatagttgttgcggaata |
231 |
Q |
| |
|
||||||||||||| ||| | ||||| |||||||||||||||||| |||||||||| || ||||||||||| | |||||||||||||||| | |||||| |
|
|
| T |
25463929 |
agtcaagttgtagttgcactttggcagagatcctgaaagtttgttacgtgcaaggtccaaatgaaacaaataagtgagattgaatagttgtggtggaata |
25463830 |
T |
|
| Q |
232 |
ctcccttcaaattggttagctctcaatatgaccacgtataagttttctgaaatcaaaattggtatggttccagaaaattcattttctcccaagttcatga |
331 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| | ||||| | || || ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25463829 |
ttcccttcaaattggtttgctctcaatatgaccacttctaagtatagtggcatgttcattggtatggttccagaaaattcattttctcccaagttcatga |
25463730 |
T |
|
| Q |
332 |
tttccaattgattaaaatcagaaaagtgcaatgaaacttcaccagatagcctattactccacaagttaatgtgatataaatttttcaaattcttccaact |
431 |
Q |
| |
|
|||||||||| | ||||||| | ||| | | |||||||||||||||||||||| ||||||||||||||| | ||||| |||||| |||||||||| |
|
|
| T |
25463729 |
tttccaattgtctccaatcagagaggtgtactagaacttcaccagatagcctattattccacaagttaatgtattgtaaatctttcaagttcttccaacc |
25463630 |
T |
|
| Q |
432 |
atgtggaattgatgttgagaaggagttgtaagaca |
466 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |
|
|
| T |
25463629 |
atgtggaattgatcctgagaaggagttgtaagaca |
25463595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 19 - 474
Target Start/End: Complemental strand, 19381885 - 19381430
Alignment:
| Q |
19 |
gaaaggtcaatagttcgcctttctgggttaacatgatacacataatcttgacctttggtaaataaatcaacagtggtatcataccatgaatccacatgat |
118 |
Q |
| |
|
|||||||||||||||||||| || ||||| |||| ||||||||| ||||||||||||||||||||||||| |||||| |||| || || | |||| |
|
|
| T |
19381885 |
gaaaggtcaatagttcgcctatccgggtttacatcatacacatattcttgacctttggtaaataaatcaattgtggtagaatacaattcataaatatgaa |
19381786 |
T |
|
| Q |
119 |
cagtatgcatttgagtcaagttgtagacgcaatgtggcaacgatcctgaaagtttgttatgtgcaaggtctaagtgaaacaaataggagagattgaatag |
218 |
Q |
| |
|
|||| ||| ||||| |||||||||| ||||||||| || ||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
19381785 |
aagtaaccatatgagtaaagttgtagatgcaatgtggaaaagatccagaaaatttgttatgtgcaaggtctaagtgaaacaaataagagagattgaataa |
19381686 |
T |
|
| Q |
219 |
ttgttgcggaatactcccttcaaattggttagctctcaatatgaccacgtataagttttctgaaatcaaaattggtatggttccagaaaattcattttct |
318 |
Q |
| |
|
|||| | |||||| ||||||||||||||||||||||||||||||| | | |||||||||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
19381685 |
ttgtggtggaatattcccttcaaattggttagctctcaatatgacaatttctaagttttctgataagttcattggtatggttccagaaaattcattttct |
19381586 |
T |
|
| Q |
319 |
cccaagttcatgatttccaattgattaaaatcagaaaagtgcaatgaaacttcaccagatagcctattactccacaagttaatgtgatataaatttttca |
418 |
Q |
| |
|
||||| ||||||| | |||| | || || |||| | ||| | |||||||||||| |||||||||||||||| || | | | | | | || |
|
|
| T |
19381585 |
cccaaattcatgaatagcaatcgttttgaagcagagaggtgtgctagaacttcaccagacagcctattactccacagtttcaagacttcaagttctgaca |
19381486 |
T |
|
| Q |
419 |
aattcttccaactatgtggaattgatgttgagaaggagttgtaagacaaatcaaca |
474 |
Q |
| |
|
| |||||||||||||| ||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
19381485 |
agttcttccaactatgcggaattgatcctgagaaggagttgtaagacaaatcaaca |
19381430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 166 - 473
Target Start/End: Complemental strand, 19437803 - 19437496
Alignment:
| Q |
166 |
gaaagtttgttatgtgcaaggtctaagtgaaacaaataggagagattgaatagttgttgcggaatactcccttcaaattggttagctctcaatatgacca |
265 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
19437803 |
gaaagtttgttatgtgcaaggtctaagtgaatcaaataagagagattgaatagttgttgcggaatagtcccttcaaatttattagctctcaatatgacca |
19437704 |
T |
|
| Q |
266 |
cgtataagttttctgaaatcaaaattggtatggttccagaaaattcattttctcccaagttcatgatttccaattgattaaaatcagaaaagtgcaatga |
365 |
Q |
| |
|
| | |||||||| ||| |||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||| || | ||| |||| ||||| |
|
|
| T |
19437703 |
cttttaagttttgtgacatcatgattggtatggttccagaaaattcattttctcctaagttcatggtttccaattgtttccggttagagaagtacaatgg |
19437604 |
T |
|
| Q |
366 |
aacttcaccagatagcctattactccacaagttaatgtgatataaatt-tttcaaattcttccaactatgtggaattgatgttgagaaggagttgtaaga |
464 |
Q |
| |
|
|| ||| || || | |||||||||||||| ||| ||| | | | || |||||| |||||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
19437603 |
aagttcccctgacaacctattactccacaggttcatg-actctcagttctttcaagttcttccaactatgcggaattgatcctgagaaggagttgtaaga |
19437505 |
T |
|
| Q |
465 |
caaatcaac |
473 |
Q |
| |
|
||||||||| |
|
|
| T |
19437504 |
caaatcaac |
19437496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 132 - 474
Target Start/End: Complemental strand, 18147709 - 18147367
Alignment:
| Q |
132 |
agtcaagttgtagacgcaatgtggcaacgatcctgaaagtttgttatgtgcaaggtctaagtgaaacaaataggagagattgaatagttgttgcggaata |
231 |
Q |
| |
|
||||||||||||||| || | ||||| || | ||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||| |||||| |
|
|
| T |
18147709 |
agtcaagttgtagacacactttggcatagaatcggaaagtttgttatgtgcaaggtctaagtgaatcaaataagagaggttgaatagttgttgtggaata |
18147610 |
T |
|
| Q |
232 |
ctcccttcaaattggttagctctcaatatgaccacgtataagttttctgaaatcaaaattggtatggttccagaaaattcattttctcccaagttcatga |
331 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |||||||| ||| |||| |||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
18147609 |
gtcccttcaaatttattagctctcaatatgaccactagtaagttttgtgacatcatgattggtatggttccagaaaattcattttctcctaagttcatga |
18147510 |
T |
|
| Q |
332 |
tttccaattgattaaaatcagaaaagtgcaatgaaacttcaccagatagcctattactccacaagttaatgtgatataaatttttcaaattcttccaact |
431 |
Q |
| |
|
|||||||||| || | | ||| |||| ||||| || ||| ||||| | |||||||||||||| ||| ||| |||||||| ||||||||| | |
|
|
| T |
18147509 |
tttccaattgtttccagtaagagaagtacaatggaagttccccagacaacctattactccacaggttcatgactctcggttttttcaagttcttccaagt |
18147410 |
T |
|
| Q |
432 |
atgtggaattgatgttgagaaggagttgtaagacaaatcaaca |
474 |
Q |
| |
|
||| ||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
18147409 |
atgcggaattgatcctgagaaggagttgtaggacaaatcaaca |
18147367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 19 - 473
Target Start/End: Complemental strand, 16678202 - 16677748
Alignment:
| Q |
19 |
gaaaggtcaatagttcgcctttctgggttaacatgatacacataatcttgacctttggtaaataaatcaacagtggtatcataccatgaatccacatgat |
118 |
Q |
| |
|
|||||||||||||||| || || |||||||||| ||||||||||||||||||||| ||||| || |||| || | ||||||||||| || ||| |
|
|
| T |
16678202 |
gaaaggtcaatagttcttctgtccgggttaacatcatacacataatcttgaccttttgtaaacaattcaattgtagccggataccatgaattcaagtgaa |
16678103 |
T |
|
| Q |
119 |
cagtatgcatttgagtcaagttgtagacgcaatgtggcaacgatcctgaaagtttgttatgtgcaaggtctaagtgaaacaaataggagagattgaatag |
218 |
Q |
| |
|
|||| ||| ||||||||| |||||| | | ||||| |||||||||||||||||||||||||| || || ||||||||| | ||||||||||||| |
|
|
| T |
16678102 |
aagtaatcatactagtcaagttatagacgtactttggcatagatcctgaaagtttgttatgtgcaagatccaaatgaaacaaagaagagagattgaataa |
16678003 |
T |
|
| Q |
219 |
ttgttgcggaatactcccttcaaattggttagctctcaatatgaccacgtataagttttctgaaatcaaaattggtatggttccagaaaattcattttct |
318 |
Q |
| |
|
||| | |||||||| |||||||| ||||||||||||||||| || || | |||||||| ||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
16678002 |
ctgtagtggaatacttccttcaaaatggttagctctcaatataacaacttctaagttttgtgacatcttaattggtatggttccagaaaattcattttct |
16677903 |
T |
|
| Q |
319 |
cccaagttcatgatttccaattgattaaaatcagaaaagtgcaatgaaacttcaccagatagcctattactccacaagttaatgtgatataaatttttca |
418 |
Q |
| |
|
|| ||||| || || ||||| | || ||| | | ||||| ||||||||||||| | | |||||| | ||||||||||| || | ||||| ||||| |
|
|
| T |
16677902 |
cctaagttaatatcttgtaattgtatcaactcaaagaggtgcactgaaacttcaccaaacaacctatttccccacaagttaaggtaagttaaatctttca |
16677803 |
T |
|
| Q |
419 |
aattcttccaactatgtggaattgatgttgagaaggagttgtaagacaaatcaac |
473 |
Q |
| |
|
| ||||||||||||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
16677802 |
agttcttccaactatgtggaattattcccgagaaggagttgtaagacaaatcaac |
16677748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 126 - 473
Target Start/End: Complemental strand, 19334894 - 19334547
Alignment:
| Q |
126 |
catttgagtcaagttgtagacgcaatgtggcaacgatcctgaaagtttgttatgtgcaaggtctaagtgaaacaaataggagagattgaatagttgttgc |
225 |
Q |
| |
|
||||| ||||||||| ||||| |||| || | |||||||||||||||||||||||||||||||||| || |||||| |||||||||||||||||||| |
|
|
| T |
19334894 |
catttcagtcaagttatagacacaatccggtatagatcctgaaagtttgttatgtgcaaggtctaagtaaatcaaataagagagattgaatagttgttgt |
19334795 |
T |
|
| Q |
226 |
ggaatactcccttcaaattggttagctctcaatatgaccacgtataagttttctgaaatcaaaattggtatggttccagaaaattcattttctcccaagt |
325 |
Q |
| |
|
|||||| ||||||||||||| || ||||||||||||| || | |||||||| ||| ||| |||||||| ||||||||||||||||||||||||| | |
|
|
| T |
19334794 |
ggaatagtcccttcaaattgattggctctcaatatgatcagttgtaagttttgtgacatccctgttggtatgcttccagaaaattcattttctcccaaat |
19334695 |
T |
|
| Q |
326 |
tcatgatttccaattgattaaaatcagaaaagtgcaatgaaacttcaccagatagcctattactccacaagttaatgtgatataaatttttcaaattctt |
425 |
Q |
| |
|
| |||| | |||||| || ||||||| | ||| | |||||||||||| |||||||||||||| | ||| | | | ||| | |||||| ||||| |
|
|
| T |
19334694 |
ttatgactctcaattgtttccaatcagagagatgctcttgaacttcaccagacagcctattactccataggttcaggagtgatagttctttcaagttctt |
19334595 |
T |
|
| Q |
426 |
ccaactatgtggaattgatgttgagaaggagttgtaagacaaatcaac |
473 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
19334594 |
ccaactatgtggaattgatcctgagaaggagttgtaagacaaatcaac |
19334547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 160 - 472
Target Start/End: Complemental strand, 18116816 - 18116504
Alignment:
| Q |
160 |
gatcctgaaagtttgttatgtgcaaggtctaagtgaaacaaataggagagattgaatagttgttgcggaatactcccttcaaattggttagctctcaata |
259 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||||||| | ||||||||||| |||| |||||||||||||||||||||||| |||||| || |
|
|
| T |
18116816 |
gatcctgaaagtttgttatgtgcaaggtccaaatgaaacaaattagtgagattgaataattgtgttggaatactcccttcaaattggttacctctcagta |
18116717 |
T |
|
| Q |
260 |
tgaccacgtataagttttctgaaatcaaaattggtatggttccagaaaattcattttctcccaagttcatgatttccaattgattaaaatcagaaaagtg |
359 |
Q |
| |
|
|||| || | ||| | || || || | ||||||||||||||||||||||||||||||||||||||||| || |||||| | |||| || | || |
|
|
| T |
18116716 |
tgactacttctaaatattgtggtatgttcaatggtatggttccagaaaattcattttctcccaagttcatgaattgcaattgtctccaatcggagaggtt |
18116617 |
T |
|
| Q |
360 |
caatgaaacttcaccagatagcctattactccacaagttaatgtgatataaatttttcaaattcttccaactatgtggaattgatgttgagaaggagttg |
459 |
Q |
| |
|
| | ||| |||||||| || |||||||||||||||||||||| | |||||| || ||| |||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
18116616 |
tactagaacctcaccagacagtctattactccacaagttaatgtaaaataaatattccaagttcttccaactatgtggaattgatcctgagaaggagttg |
18116517 |
T |
|
| Q |
460 |
taagacaaatcaa |
472 |
Q |
| |
|
||||||||||||| |
|
|
| T |
18116516 |
taagacaaatcaa |
18116504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 19 - 475
Target Start/End: Original strand, 14895398 - 14895854
Alignment:
| Q |
19 |
gaaaggtcaatagttcgcctttctgggttaacatgatacacataatcttgacctttggtaaataaatcaacagtggtatcataccatgaatccacatgat |
118 |
Q |
| |
|
||||||||||||||||| || || || || ||||||||||| |||||||||||||||||||||| || ||| | |||| || |||||||| |
|
|
| T |
14895398 |
gaaaggtcaatagttcgtctctccggacggacttgatacacatattcttgacctttggtaaataaattaaatgtgacaggcctccatacatacacatgat |
14895497 |
T |
|
| Q |
119 |
cagtatgcatttgagtcaagttgtagacgcaatgtggcaacgatcctgaaagtttgttatgtgcaaggtctaagtgaaacaaataggagagattgaatag |
218 |
Q |
| |
|
||||| ||||||||||||||||||||||| | ||||| |||||||||| |||||| ||||||||||| || ||||||||| | | ||||||||||| |
|
|
| T |
14895498 |
tagtattcatttgagtcaagttgtagacgctgttcggcaaagatcctgaaaatttgttgtgtgcaaggtccaaatgaaacaaagaagtgagattgaataa |
14895597 |
T |
|
| Q |
219 |
ttgttgcggaatactcccttcaaattggttagctctcaatatgaccacgtataagttttctgaaatcaaaattggtatggttccagaaaattcattttct |
318 |
Q |
| |
|
|||| | |||||| |||||||||||||||||| ||||||||| ||||| | ||||| || ||| |||| ||||||| |||||| |||||||||||||| |
|
|
| T |
14895598 |
ttgtggtggaatattcccttcaaattggttagatctcaatataaccacttgtaagtattgtgacatcatggttggtatagttccataaaattcattttct |
14895697 |
T |
|
| Q |
319 |
cccaagttcatgatttccaattgattaaaatcagaaaagtgcaatgaaacttcaccagatagcctattactccacaagttaatgtgatataaatttttca |
418 |
Q |
| |
|
|||||| |||| | || | || |||| || | ||||| | |||||||||||| |||||||| || |||||| |||||| | ||||| | ||| |
|
|
| T |
14895698 |
cccaagaacatgtatcgtaaatctttcaaattagcgaggtgcactagaacttcaccagacagcctatttctacacaagataatgtattgtaaatctgtca |
14895797 |
T |
|
| Q |
419 |
aattcttccaactatgtggaattgatgttgagaaggagttgtaagacaaatcaacat |
475 |
Q |
| |
|
| ||||||||||||||||||||| | ||||||||||||| | |||| |||||||| |
|
|
| T |
14895798 |
agttcttccaactatgtggaatttctcctgagaaggagttgaatgacacatcaacat |
14895854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 130 - 473
Target Start/End: Complemental strand, 17950713 - 17950370
Alignment:
| Q |
130 |
tgagtcaagttgtagacgcaatgtggcaacgatcctgaaagtttgttatgtgcaaggtctaagtgaaacaaataggagagattgaatagttgttgcggaa |
229 |
Q |
| |
|
||||||||||| ||||| || | ||| | ||||||||||||||||| ||||||||||| || |||||||| || | |||||||||| |||| |||| |
|
|
| T |
17950713 |
tgagtcaagttatagacacactctggtatagatcctgaaagtttgttttgtgcaaggtccaaatgaaacaagtaaggaagattgaataattgtgttggaa |
17950614 |
T |
|
| Q |
230 |
tactcccttcaaattggttagctctcaatatgaccacgtataagttttctgaaatcaaaattggtatggttccagaaaattcattttctcccaagttcat |
329 |
Q |
| |
|
|| | ||||| ||||||||||||||||||||||| || | ||| |||| ||| | |||||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
17950613 |
tagttccttctaattggttagctctcaatatgacaacttctaatttttgtgataaattgattggtattgttgcagaaaattcattttctcccaagttcat |
17950514 |
T |
|
| Q |
330 |
gatttccaattgattaaaatcagaaaagtgcaatgaaacttcaccagatagcctattactccacaagttaatgtgatataaatttttcaaattcttccaa |
429 |
Q |
| |
|
|||||||||||| | ||||||| | ||| | ||||||||||||||||||||||||||| | |||||||| || ||| | | ||| ||||| || |
|
|
| T |
17950513 |
gatttccaattgtctccaatcagagaggtgtcctagaacttcaccagatagcctattactccaaaggttaatgtaatgtaattctgacaagttctttaaa |
17950414 |
T |
|
| Q |
430 |
ctatgtggaattgatgttgagaaggagttgtaagacaaatcaac |
473 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
17950413 |
ctatgtggaattgatcctgagaaggagttgtaagaaaaatcaac |
17950370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 160 - 472
Target Start/End: Complemental strand, 19462040 - 19461726
Alignment:
| Q |
160 |
gatcctgaaagtttgttatgtgcaaggtctaagtgaaacaaataggagagattgaatagttgttgcggaatactcccttcaaattggttagctctca--a |
257 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||||||| | ||||||||||| |||| |||||||||||||||||||||||| |||||| | |
|
|
| T |
19462040 |
gatcctgaaagtttgttatgtgcaaggtccaaatgaaacaaattagtgagattgaataattgtgttggaatactcccttcaaattggttacctctcagta |
19461941 |
T |
|
| Q |
258 |
tatgaccacgtataagttttctgaaatcaaaattggtatggttccagaaaattcattttctcccaagttcatgatttccaattgattaaaatcagaaaag |
357 |
Q |
| |
|
||||| || | ||| | || || || | ||||||||||||||||||||||||||||||||||||||||| || |||| | | |||| || | | |
|
|
| T |
19461940 |
tatgaatacttctaaatattgtggtatgttcaatggtatggttccagaaaattcattttctcccaagttcatgaattgcaatcgtctccaatcggagagg |
19461841 |
T |
|
| Q |
358 |
tgcaatgaaacttcaccagatagcctattactccacaagttaatgtgatataaatttttcaaattcttccaactatgtggaattgatgttgagaaggagt |
457 |
Q |
| |
|
| | | ||| |||||||| || |||||||||||||||||||||| | |||||| || ||| |||||||||||||||||||||||| ||||||||||| |
|
|
| T |
19461840 |
tttactagaacctcaccagacagtctattactccacaagttaatgtaaaataaatattccaagttcttccaactatgtggaattgatcctgagaaggagt |
19461741 |
T |
|
| Q |
458 |
tgtaagacaaatcaa |
472 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
19461740 |
tgtaagacaaatcaa |
19461726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 130 - 473
Target Start/End: Complemental strand, 18109320 - 18108977
Alignment:
| Q |
130 |
tgagtcaagttgtagacgcaatgtggcaacgatcctgaaagtttgttatgtgcaaggtctaagtgaaacaaataggagagattgaatagttgttgcggaa |
229 |
Q |
| |
|
||||||||||| ||||| || | ||| | |||| |||||||||||| ||||||||||| || |||||||| || | ||| |||||| |||| |||| |
|
|
| T |
18109320 |
tgagtcaagttatagacacactttggtatagatcttgaaagtttgttttgtgcaaggtccaaatgaaacaagtaaggaagaatgaataattgtgttggaa |
18109221 |
T |
|
| Q |
230 |
tactcccttcaaattggttagctctcaatatgaccacgtataagttttctgaaatcaaaattggtatggttccagaaaattcattttctcccaagttcat |
329 |
Q |
| |
|
|| | ||||||||||||||||||||||||||||| || | ||| |||| ||| | |||||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
18109220 |
tagttccttcaaattggttagctctcaatatgacaacttctaatttttgtgataaattgattggtattgttgcagaaaattcattttctcccaagttcat |
18109121 |
T |
|
| Q |
330 |
gatttccaattgattaaaatcagaaaagtgcaatgaaacttcaccagatagcctattactccacaagttaatgtgatataaatttttcaaattcttccaa |
429 |
Q |
| |
|
|||||||||||| | ||||||| | ||| | ||||||||||||||||||||||||||| | |||||||| || ||| | | ||| ||||||||| |
|
|
| T |
18109120 |
gatttccaattgtctccaatcagagaggtgtcctagaacttcaccagatagcctattactccaaaggttaatgtaatgtaattatgacaagttcttccaa |
18109021 |
T |
|
| Q |
430 |
ctatgtggaattgatgttgagaaggagttgtaagacaaatcaac |
473 |
Q |
| |
|
||||| |||||||| |||||||||||||||||| |||||||| |
|
|
| T |
18109020 |
ctatgatgaattgatcctgagaaggagttgtaagaaaaatcaac |
18108977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 160 - 473
Target Start/End: Complemental strand, 19425538 - 19425225
Alignment:
| Q |
160 |
gatcctgaaagtttgttatgtgcaaggtctaagtgaaacaaataggagagattgaatagttgttgcggaatactcccttcaaattggttagctctcaata |
259 |
Q |
| |
|
||||||||||||||||| | |||||||| || ||||||||||| | |||||||||| ||| || ||| ||||||||||||||||||||||||||| |
|
|
| T |
19425538 |
gatcctgaaagtttgtttagagcaaggtccaaatgaaacaaataaggaagattgaataattgccttgggatagtcccttcaaattggttagctctcaata |
19425439 |
T |
|
| Q |
260 |
tgaccacgtataagttttctgaaatcaaaattggtatggttccagaaaattcattttctcccaagttcatgatttccaattgattaaaatcagaaaagtg |
359 |
Q |
| |
|
|||| || | ||| |||| ||| | ||||||||| |||| ||||||| |||||||||||| ||||||| | |||||| || ||||||| | ||| |
|
|
| T |
19425438 |
tgacgacttctaatttttgtgataagttcattggtatgattcctgaaaatttattttctcccaaaatcatgatctgcaattgtttccaatcagagaggtg |
19425339 |
T |
|
| Q |
360 |
caatgaaacttcaccagatagcctattactccacaagttaatgtgatataaatttttcaaattcttccaactatgtggaattgatgttgagaaggagttg |
459 |
Q |
| |
|
| | |||||||| |||||| ||||||| || ||||||||| |||||||| |||||| |||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
19425338 |
ctgtataacttcacaggatagcttattacttcataagttaatggaatataaatctttcaagttcttccaactatgtggaattgatcccgagaatgagttg |
19425239 |
T |
|
| Q |
460 |
taagacaaatcaac |
473 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
19425238 |
taagacaaatcaac |
19425225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 133 - 473
Target Start/End: Original strand, 17726659 - 17726999
Alignment:
| Q |
133 |
gtcaagttgtagacgcaatgtggcaacgatcctgaaagtttgttatgtgcaaggtctaagtgaaacaaataggagagattgaatagttgttgcggaatac |
232 |
Q |
| |
|
||||||||||||||||| | ||||| || |||||||||||||||||||||||||| ||||| |||||| | |||||||||||||||||| |||||| |
|
|
| T |
17726659 |
gtcaagttgtagacgcactttggcatagaacctgaaagtttgttatgtgcaaggtccaagtgcaacaaagaagagagattgaatagttgtgcaggaatag |
17726758 |
T |
|
| Q |
233 |
tcccttcaaattggttagctctcaatatgaccacgtataagttttctgaaatcaaaattggtatggttccagaaaattcattttctcccaagttcatgat |
332 |
Q |
| |
|
||||||||| || ||| ||| ||||||||||| | ||||| || ||| ||| | ||||||| ||||||||||||||||||||||||| | ||| |
|
|
| T |
17726759 |
gcccttcaaaatgattacctcccaatatgaccatttctaagtgttgtgacatctctactggtatgtttccagaaaattcattttctcccaaaataatgtg |
17726858 |
T |
|
| Q |
333 |
ttccaattgattaaaatcagaaaagtgcaatgaaacttcaccagatagcctattactccacaagttaatgtgatataaatttttcaaattcttccaacta |
432 |
Q |
| |
|
|| |||||| || |||||||| | ||| | |||||||||||| |||||||||||||| | ||| | | | || | | |||| |||||||||||| |
|
|
| T |
17726859 |
ttgcaattgtttcaaatcagagaggtgtcctagaacttcaccagacagcctattactccataggtttaggagtcctagttctctcaagttcttccaacta |
17726958 |
T |
|
| Q |
433 |
tgtggaattgatgttgagaaggagttgtaagacaaatcaac |
473 |
Q |
| |
|
| |||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
17726959 |
tctggaattgatcctgagaaggaattgtaagacaaatcaac |
17726999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 133 - 473
Target Start/End: Original strand, 19027888 - 19028228
Alignment:
| Q |
133 |
gtcaagttgtagacgcaatgtggcaacgatcctgaaagtttgttatgtgcaaggtctaagtgaaacaaataggagagattgaatagttgttgcggaatac |
232 |
Q |
| |
|
||||||||||||||||| | ||||| || |||||||||||||||||||||||||| ||||| |||||| | |||||||||||||||||| |||||| |
|
|
| T |
19027888 |
gtcaagttgtagacgcactttggcatagaacctgaaagtttgttatgtgcaaggtccaagtgcaacaaagaagagagattgaatagttgtgcaggaatag |
19027987 |
T |
|
| Q |
233 |
tcccttcaaattggttagctctcaatatgaccacgtataagttttctgaaatcaaaattggtatggttccagaaaattcattttctcccaagttcatgat |
332 |
Q |
| |
|
||||||||| || ||| ||| ||||||||||| | ||||| || ||| ||| | ||||||| ||||||||||||||||||||||||| | ||| |
|
|
| T |
19027988 |
gcccttcaaaatgattacctcccaatatgaccatttctaagtgttgtgacatctctactggtatgtttccagaaaattcattttctcccaaaataatgtg |
19028087 |
T |
|
| Q |
333 |
ttccaattgattaaaatcagaaaagtgcaatgaaacttcaccagatagcctattactccacaagttaatgtgatataaatttttcaaattcttccaacta |
432 |
Q |
| |
|
|| |||||| || |||||||| | ||| | |||||||||||| |||||||||||||| | ||| | | | || | | |||| |||||||||||| |
|
|
| T |
19028088 |
ttgcaattgtttcaaatcagagaggtgtcctagaacttcaccagacagcctattactccataggtttaggagtcctagttctctcaagttcttccaacta |
19028187 |
T |
|
| Q |
433 |
tgtggaattgatgttgagaaggagttgtaagacaaatcaac |
473 |
Q |
| |
|
| |||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
19028188 |
tctggaattgatcctgagaaggaattgtaagacaaatcaac |
19028228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 133 - 473
Target Start/End: Complemental strand, 19394027 - 19393687
Alignment:
| Q |
133 |
gtcaagttgtagacgcaatgtggcaacgatcctgaaagtttgttatgtgcaaggtctaagtgaaacaaataggagagattgaatagttgttgcggaatac |
232 |
Q |
| |
|
|||||||||| ||| || | ||||| || ||||||||||| ||||||||||| || || ||||||| ||| |||| ||||||||||||||| |||||| |
|
|
| T |
19394027 |
gtcaagttgtcgacacactttggcacagaacctgaaagtttattatgtgcaagatccaaatgaaacatataagagatattgaatagttgttgtggaatag |
19393928 |
T |
|
| Q |
233 |
tcccttcaaattggttagctctcaatatgaccacgtataagttttctgaaatcaaaattggtatggttccagaaaattcattttctcccaagttcatgat |
332 |
Q |
| |
|
| ||||||||||| || ||||||||||||||||| |||||||| || ||| || ||||||| |||||||||||||||||| |||||| |||||||| |
|
|
| T |
19393927 |
taccttcaaattgattggctctcaatatgaccactactaagttttgtggcatcccaactggtatgtttccagaaaattcattttttcccaaattcatgat |
19393828 |
T |
|
| Q |
333 |
ttccaattgattaaaatcagaaaagtgcaatgaaacttcaccagatagcctattactccacaagttaatgtgatataaatttttcaaattcttccaacta |
432 |
Q |
| |
|
| |||||| | ||||||| | || |||| |||||||||||| ||| |||||||||| | ||| | | | | | | ||| |||||||||||| |
|
|
| T |
19393827 |
ctgcaattgtctccaatcagagaggtttaatggaacttcaccagacagcttattactccataggttcaagacttccagttctgacaagttcttccaacta |
19393728 |
T |
|
| Q |
433 |
tgtggaattgatgttgagaaggagttgtaagacaaatcaac |
473 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
19393727 |
tgtggaattgatcctgagaaggagttataagacaaatcaac |
19393687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 132 - 470
Target Start/End: Complemental strand, 18104225 - 18103887
Alignment:
| Q |
132 |
agtcaagttgtagacgcaatgtggcaacgatcctgaaagtttgttatgtgcaaggtctaagtgaaacaaataggagagattgaatagttgttgcggaata |
231 |
Q |
| |
|
||||||||||||||| || | ||||| || || ||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||| |||| |
|
|
| T |
18104225 |
agtcaagttgtagacacactttggcatagaaccggaaagtttgttatgtgcaaggtctaagaaaatcaaataagagagattgaatagttgttgcagaatt |
18104126 |
T |
|
| Q |
232 |
ctcccttcaaattggttagctctcaatatgaccacgtataagttttctgaaatcaaaattggtatggttccagaaaattcattttctcccaagttcatga |
331 |
Q |
| |
|
||||||||||||| || ||||||||||||| ||| | |||||||| ||| || | |||||| ||||||||||||||||||||||| | ||||||| |
|
|
| T |
18104125 |
gtcccttcaaattgattggctctcaatatgatcacttctaagttttgtgacatacctactggtatagttccagaaaattcattttctcctacgttcatgg |
18104026 |
T |
|
| Q |
332 |
tttccaattgattaaaatcagaaaagtgcaatgaaacttcaccagatagcctattactccacaagttaatgtgatataaatt-tttcaaattcttccaac |
430 |
Q |
| |
|
| | |||||| || || | ||| |||| ||||| || || || || | |||||||||||||| || ||| | | | || ||||| |||||||||| |
|
|
| T |
18104025 |
tctgcaattgtttcaagttagagaagtacaatggaagtttccccgacaacctattactccacagattcatg-actctcagttctttcatgttcttccaac |
18103927 |
T |
|
| Q |
431 |
tatgtggaattgatgttgagaaggagttgtaagacaaatc |
470 |
Q |
| |
|
|||| ||||||| | |||||||||||||||||||||||| |
|
|
| T |
18103926 |
tatgaggaattgttcctgagaaggagttgtaagacaaatc |
18103887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 160 - 475
Target Start/End: Complemental strand, 19400577 - 19400262
Alignment:
| Q |
160 |
gatcctgaaagtttgttatgtgcaaggtctaagtgaaacaaataggagagattgaatagttgttgcggaatactcccttcaaattggttagctctcaata |
259 |
Q |
| |
|
||||||||||||||||| ||||||||||| || ||||||||||| | |||||||||| |||| |||||| |||||||||||||||||||||||| || |
|
|
| T |
19400577 |
gatcctgaaagtttgttttgtgcaaggtccaaatgaaacaaataagtaagattgaataattgtgttggaatagtcccttcaaattggttagctctcagta |
19400478 |
T |
|
| Q |
260 |
tgaccacgtataagttttctgaaatcaaaattggtatggttccagaaaattcattttctcccaagttcatgatttccaattgattaaaatcagaaaagtg |
359 |
Q |
| |
|
|||| || | |||||||| ||||| |||||||||||||| ||||||||||||||||||||| ||| || ||||||||| | ||||||| | ||| |
|
|
| T |
19400477 |
tgacaacttctaagttttgtgaaaagttgattggtatggttcccgaaaattcattttctcccaagatcaagacttccaattgtctccaatcagagaggtg |
19400378 |
T |
|
| Q |
360 |
caatgaaacttcaccagatagcctattactccacaagttaatgtgatataaatttttcaaattcttccaactatgtggaattgatgttgagaaggagttg |
459 |
Q |
| |
|
| ||||||||||||||||||||| ||||| ||| ||| | | ||||| |||||||||||||| ||||||||| |||||| ||||| |
|
|
| T |
19400377 |
tcccagagcttcaccagatagcctattacgccacaggttgatgactcccacttcattcaagttcttccaactatgcggaattgatcctgagaaaaagttg |
19400278 |
T |
|
| Q |
460 |
taagacaaatcaacat |
475 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
19400277 |
taagacaaatcaacat |
19400262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 377 - 473
Target Start/End: Complemental strand, 19439279 - 19439183
Alignment:
| Q |
377 |
atagcctattactccacaagttaatgtgatataaatttttcaaattcttccaactatgtggaattgatgttgagaaggagttgtaagacaaatcaac |
473 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||| |||||| ||| ||||| ||| |||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
19439279 |
atagcctattactccacaagttaatgtaacataaatctttcaagttcctccaattatatggaattgatcttgagacggagttgtaagacaaatcaac |
19439183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 110 - 219
Target Start/End: Complemental strand, 19439711 - 19439602
Alignment:
| Q |
110 |
ccacatgatcagtatgcatttgagtcaagttgtagacgcaatgtggcaacgatcctgaaagtttgttatgtgcaaggtctaagtgaaacaaataggagag |
209 |
Q |
| |
|
||||||||||| ||| ||||||||||| |||||||||||| || | ||| |||||||||| |||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
19439711 |
ccacatgatcattattcatttgagtcatgttgtagacgcagtgcgacaaagatcctgaaaatttgttatgtgcaaggtccaagtgaaacaaattagagaa |
19439612 |
T |
|
| Q |
210 |
attgaatagt |
219 |
Q |
| |
|
|||| ||||| |
|
|
| T |
19439611 |
attgtatagt |
19439602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #29
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 421 - 474
Target Start/End: Complemental strand, 18016612 - 18016559
Alignment:
| Q |
421 |
ttcttccaactatgtggaattgatgttgagaaggagttgtaagacaaatcaaca |
474 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
18016612 |
ttcttccaactatgtggaattgatcttgagaaggagttgtaagataaatcaaca |
18016559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #30
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 208 - 296
Target Start/End: Complemental strand, 19439447 - 19439359
Alignment:
| Q |
208 |
agattgaatagttgttgcggaatactcccttcaaattggttagctctcaatatgaccacgtataagttttctgaaatcaaaattggtat |
296 |
Q |
| |
|
||||||||||||||||| |||||| | ||||||||||||||| |||||||||| ||||| |||||||| ||| |||| |||||||| |
|
|
| T |
19439447 |
agattgaatagttgttgtggaatagttccttcaaattggttatctctcaatattaccactcctaagttttgtgacatcatgattggtat |
19439359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #31
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 414 - 477
Target Start/End: Complemental strand, 18144787 - 18144724
Alignment:
| Q |
414 |
tttcaaattcttccaactatgtggaattgatgttgagaaggagttgtaagacaaatcaacataa |
477 |
Q |
| |
|
|||||| ||||||||||||| |||||||||| | |||| || ||||||||||||||||||||| |
|
|
| T |
18144787 |
tttcaagttcttccaactatatggaattgatcctcagaatgaattgtaagacaaatcaacataa |
18144724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #32
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 17950827 - 17950758
Alignment:
| Q |
19 |
gaaaggtcaatagttcgcctttctgggttaacatgatacacataatcttgacctttggtaaataaatcaa |
88 |
Q |
| |
|
|||||||||||||||||||| | ||||||||| |||||||||||||| |||||| ||||| || |||| |
|
|
| T |
17950827 |
gaaaggtcaatagttcgcctatacaggttaacatcatacacataatcttaaccttttgtaaacaactcaa |
17950758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 401
Target Start/End: Complemental strand, 19439313 - 19439278
Alignment:
| Q |
366 |
aacttcaccagatagcctattactccacaagttaat |
401 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| |
|
|
| T |
19439313 |
aactttaccagatagcctattactccacaagttaat |
19439278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 19456284 - 19456228
Alignment:
| Q |
24 |
gtcaatagttcgcctttctgggttaacatgatacacataatcttgacctttggtaaa |
80 |
Q |
| |
|
||||||||||||||||||||| ||| | ||| ||||||||||||||||| ||||| |
|
|
| T |
19456284 |
gtcaatagttcgcctttctggtcaaactttataaacataatcttgaccttttgtaaa |
19456228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 19 - 473
Target Start/End: Complemental strand, 15536525 - 15536071
Alignment:
| Q |
19 |
gaaaggtcaatagttcgcctttctgggttaacatgatacacataatcttgacctttggtaaataaatcaacagtggtatcataccatgaatccacatgat |
118 |
Q |
| |
|
||||||||||||||||| ||||| | ||| | || ||||||||||||||||||||||||||||||||||| |||| | |||||||| || ||||||| |
|
|
| T |
15536525 |
gaaaggtcaatagttcgtctttccgagttgatatcatacacataatcttgacctttggtaaataaatcaattgtggaagtataccatggatttacatgat |
15536426 |
T |
|
| Q |
119 |
cagtatgcatttgagtcaagttgtagacgcaatgtggcaacgatcctgaaagtttgttatgtgcaaggtctaagtgaaacaaataggagagattgaatag |
218 |
Q |
| |
|
|||| |||||||||||||||||| ||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
15536425 |
aagtaaccatttgagtcaagttgtacacgcagtgtggtaaagatcctgaaagtttgttatgtgcaaggtctaagtgaaacaaataagagagattgaataa |
15536326 |
T |
|
| Q |
219 |
ttgttgcggaatactcccttcaaattggttagctctcaatatgaccacgtataagttttctgaaatcaaaattggtatggttccagaaaattcattttct |
318 |
Q |
| |
|
|||| |||||||| |||||||||||| || | ||||||||||||||| |||||||| ||| |||| |||||||||||||||||||||||||||||| |
|
|
| T |
15536325 |
ttgtggcggaataatcccttcaaatttattggttctcaatatgaccactactaagttttgtgacatcatgattggtatggttccagaaaattcattttct |
15536226 |
T |
|
| Q |
319 |
cccaagttcatgatttccaattgattaaaatcagaaaagtgcaatgaaacttcaccagatagcctattactccacaagttaatgtgatataaatt-tttc |
417 |
Q |
| |
|
|||||||||||| ||| |||||| || || |||| | ||||| || |||||||||||| | |||||| |||||| ||| ||| | | |||| ||| |
|
|
| T |
15536225 |
cccaagttcatggtttgcaattgtttcgaagcagagaggtgcattggaacttcaccagacaaactattattccacaggttcatg-actgtcaattcattc |
15536127 |
T |
|
| Q |
418 |
aaattcttccaactatgtggaattgatgttgagaaggagttgtaagacaaatcaac |
473 |
Q |
| |
|
|| |||||||||||||||||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
15536126 |
aagttcttccaactatgtggaattgatcctgagaaggagttgtaagaaaaatcaac |
15536071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 134 - 473
Target Start/End: Original strand, 2709711 - 2710041
Alignment:
| Q |
134 |
tcaagttgtagacgcaatgtggcaacgatcctgaaagtttgttatgtgcaaggtctaagtgaaacaaataggagagattgaatagttgttgcggaatact |
233 |
Q |
| |
|
||||||| |||||||| | ||| | |||||||||||||| || ||||||||||| |||||| |||| | ||||||||||||| |||| |||||| | |
|
|
| T |
2709711 |
tcaagttatagacgcactctggtatagatcctgaaagtttattttgtgcaaggtccaagtgatacaacttagagagattgaataattgtgttggaatagt |
2709810 |
T |
|
| Q |
234 |
cccttcaaattggttagctctcaatatgaccacgtataagttttctgaaatcaaaattggtatggttccagaaaattcattttctcccaagttcatgatt |
333 |
Q |
| |
|
||||| ||||||||||||||||||||||| || | || | || || ||| |||||||| ||||||||||||||||||||||| | ||||||| | |
|
|
| T |
2709811 |
ccctttaaattggttagctctcaatatgagaactttcaaatcttgcgacatcttgattggtatagttccagaaaattcattttctcctaggttcatggct |
2709910 |
T |
|
| Q |
334 |
tccaattgattaaaatcagaaaagtgcaatgaaacttcaccagatagcctattactccacaagttaatgtgatataaatttttcaaattcttccaactat |
433 |
Q |
| |
|
| |||| || ||| ||| | ||||| || ||||||||||||||| |||||||||||||||| | | ||| ||| ||||||||||||| |
|
|
| T |
2709911 |
tgcaatccataccaattagagaggtgcattggaacttcaccagatagtttattactccacaagtt---------cacaatttccaagttcttccaactat |
2710001 |
T |
|
| Q |
434 |
gtggaattgatgttgagaaggagttgtaagacaaatcaac |
473 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
2710002 |
gtggaattgatcctgagaaggagttgtaagacaaatcaac |
2710041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 126; Significance: 9e-65; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 19 - 472
Target Start/End: Original strand, 13665958 - 13666411
Alignment:
| Q |
19 |
gaaaggtcaatagttcgcctttctgggttaacatgatacacataatcttgacctttggtaaataaatcaacagtggtatcataccatgaatccacatgat |
118 |
Q |
| |
|
||||||||||||||||| || ||||| || || ||||||| |||||||||||||||||||||||||| || |||||| || | ||||||||||| |
|
|
| T |
13665958 |
gaaaggtcaatagttcgtctatctggattgacttgatacatataatcttgacctttggtaaataaattaaatgtggtagggtagtacaaatccacatgaa |
13666057 |
T |
|
| Q |
119 |
cagtatgcatttgagtcaagttgtagacgcaatgtggcaacgatcctgaaagtttgttatgtgcaaggtctaagtgaaacaaataggagagattgaatag |
218 |
Q |
| |
|
|||| ||| |||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||| |||||||||||| |||||||| ||||| |
|
|
| T |
13666058 |
aagtaaccatatgagtcaagttgtagacgttgtgtggcaaagatcctgaaagtttcatatgtgcaaggtctaggtgaaacaaataagagagattaaatag |
13666157 |
T |
|
| Q |
219 |
ttgttgcggaatactcccttcaaattggttagctctcaatatgaccacgtataagttttctgaaatcaaaattggtatggttccagaaaattcattttct |
318 |
Q |
| |
|
|||| | |||||||| |||||||||| || |||||||||||||||| | |||||| ||||||||| |||| |||||||||| ||||||||||||| |
|
|
| T |
13666158 |
ttgtgggggaatactgccttcaaatttattttctctcaatatgaccacttgaaagtttggtgaaatcaagattgttatggttccattaaattcattttct |
13666257 |
T |
|
| Q |
319 |
cccaagttcatgatttccaattgattaaaatcagaaaagtgcaatgaaacttcaccagatagcctattactccacaagttaatgtgatataaatttttca |
418 |
Q |
| |
|
|| ||||||||| ||| ||| || || || | ||| |||| ||| || ||| ||||| | || ||||||||||| || | | | | | ||||| |
|
|
| T |
13666258 |
cctaagttcatggtttgcaactgtttcaagttagagaagtatgatggaagttccccagacaacccattactccacaggtccaggacacccagttctttca |
13666357 |
T |
|
| Q |
419 |
aattcttccaactatgtggaattgatgttgagaaggagttgtaagacaaatcaa |
472 |
Q |
| |
|
| ||| ||||||| |||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
13666358 |
agttcatccaactgtgtggaattgatcctgagaaagagttgtaagacaaatcaa |
13666411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0648 (Bit Score: 120; Significance: 3e-61; HSPs: 1)
Name: scaffold0648
Description:
Target: scaffold0648; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 126 - 473
Target Start/End: Original strand, 3219 - 3566
Alignment:
| Q |
126 |
catttgagtcaagttgtagacgcaatgtggcaacgatcctgaaagtttgttatgtgcaaggtctaagtgaaacaaataggagagattgaatagttgttgc |
225 |
Q |
| |
|
||||||| |||| ||||||| ||| | ||||| |||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||| |||| |
|
|
| T |
3219 |
catttgactcaaattgtagatgcagtttggcatagatcctgagagtttgttatgtgcaaggtccaagtgaaacaaataagagagattgaataattgtgat |
3318 |
T |
|
| Q |
226 |
ggaatactcccttcaaattggttagctctcaatatgaccacgtataagttttctgaaatcaaaattggtatggttccagaaaattcattttctcccaagt |
325 |
Q |
| |
|
|||||| ||||||| |||||||||||||| |||||||| || | ||| | || || || |||||||||||||||||||| ||||||||| |||| | |
|
|
| T |
3319 |
ggaatagtcccttcgaattggttagctcttaatatgacaacttctaaatattgtggcatgttgattggtatggttccagaaaactcattttcttccaaat |
3418 |
T |
|
| Q |
326 |
tcatgatttccaattgattaaaatcagaaaagtgcaatgaaacttcaccagatagcctattactccacaagttaatgtgatataaatttttcaaattctt |
425 |
Q |
| |
|
|||||| || |||||| || ||||||| | ||| | |||||||||||| ||| |||||||||||||| |||||| | ||| | | ||| ||||| |
|
|
| T |
3419 |
tcatgaattgcaattgtttccaatcagagaggtgtcctagaacttcaccagacagcttattactccacaagataatgtaagttaattctaacaagttctt |
3518 |
T |
|
| Q |
426 |
ccaactatgtggaattgatgttgagaaggagttgtaagacaaatcaac |
473 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
3519 |
ccaactatgtggaattgatcctgagaaggagttgtaagacaaatcaac |
3566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0640 (Bit Score: 120; Significance: 3e-61; HSPs: 1)
Name: scaffold0640
Description:
Target: scaffold0640; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 126 - 473
Target Start/End: Complemental strand, 6288 - 5941
Alignment:
| Q |
126 |
catttgagtcaagttgtagacgcaatgtggcaacgatcctgaaagtttgttatgtgcaaggtctaagtgaaacaaataggagagattgaatagttgttgc |
225 |
Q |
| |
|
||||||| |||| ||||||| ||| | ||||| |||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||| |||| |
|
|
| T |
6288 |
catttgactcaaattgtagatgcagtttggcatagatcctgagagtttgttatgtgcaaggtccaagtgaaacaaataagagagattgaataattgtgat |
6189 |
T |
|
| Q |
226 |
ggaatactcccttcaaattggttagctctcaatatgaccacgtataagttttctgaaatcaaaattggtatggttccagaaaattcattttctcccaagt |
325 |
Q |
| |
|
|||||| ||||||| |||||||||||||| |||||||| || | ||| | || || || |||||||||||||||||||| ||||||||| |||| | |
|
|
| T |
6188 |
ggaatagtcccttcgaattggttagctcttaatatgacaacttctaaatattgtggcatgttgattggtatggttccagaaaactcattttcttccaaat |
6089 |
T |
|
| Q |
326 |
tcatgatttccaattgattaaaatcagaaaagtgcaatgaaacttcaccagatagcctattactccacaagttaatgtgatataaatttttcaaattctt |
425 |
Q |
| |
|
|||||| || |||||| || ||||||| | ||| | |||||||||||| ||| |||||||||||||| |||||| | ||| | | ||| ||||| |
|
|
| T |
6088 |
tcatgaattgcaattgtttccaatcagagaggtgtcctagaacttcaccagacagcttattactccacaagataatgtaagttaattctaacaagttctt |
5989 |
T |
|
| Q |
426 |
ccaactatgtggaattgatgttgagaaggagttgtaagacaaatcaac |
473 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5988 |
ccaactatgtggaattgatcctgagaaggagttgtaagacaaatcaac |
5941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274 (Bit Score: 120; Significance: 3e-61; HSPs: 2)
Name: scaffold0274
Description:
Target: scaffold0274; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 126 - 473
Target Start/End: Original strand, 2688 - 3035
Alignment:
| Q |
126 |
catttgagtcaagttgtagacgcaatgtggcaacgatcctgaaagtttgttatgtgcaaggtctaagtgaaacaaataggagagattgaatagttgttgc |
225 |
Q |
| |
|
||||||| |||| ||||||| ||| | ||||| |||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||| |||| |
|
|
| T |
2688 |
catttgactcaaattgtagatgcagtttggcatagatcctgagagtttgttatgtgcaaggtccaagtgaaacaaataagagagattgaataattgtgat |
2787 |
T |
|
| Q |
226 |
ggaatactcccttcaaattggttagctctcaatatgaccacgtataagttttctgaaatcaaaattggtatggttccagaaaattcattttctcccaagt |
325 |
Q |
| |
|
|||||| ||||||| |||||||||||||| |||||||| || | ||| | || || || |||||||||||||||||||| ||||||||| |||| | |
|
|
| T |
2788 |
ggaatagtcccttcgaattggttagctcttaatatgacaacttctaaatattgtggcatgttgattggtatggttccagaaaactcattttcttccaaat |
2887 |
T |
|
| Q |
326 |
tcatgatttccaattgattaaaatcagaaaagtgcaatgaaacttcaccagatagcctattactccacaagttaatgtgatataaatttttcaaattctt |
425 |
Q |
| |
|
|||||| || |||||| || ||||||| | ||| | |||||||||||| ||| |||||||||||||| |||||| | ||| | | ||| ||||| |
|
|
| T |
2888 |
tcatgaattgcaattgtttccaatcagagaggtgtcctagaacttcaccagacagcttattactccacaagataatgtaagttaattctaacaagttctt |
2987 |
T |
|
| Q |
426 |
ccaactatgtggaattgatgttgagaaggagttgtaagacaaatcaac |
473 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
2988 |
ccaactatgtggaattgatcctgagaaggagttgtaagacaaatcaac |
3035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 164 - 341
Target Start/End: Complemental strand, 21470 - 21294
Alignment:
| Q |
164 |
ctgaaagtttgttatgtgcaaggtctaagtgaaacaaataggagagattgaatagttgttgcggaatactcccttcaaattggttagctctcaatatgac |
263 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||||||||| ||||||||||||| |||| | |||||| | ||||| |||||||||||||| |||||||| |
|
|
| T |
21470 |
ctgagagtttgttatgtgcaaggttcaagtgaaacaaataagagagattgaataattgtggtggaatagt-ccttcgaattggttagctcttaatatgac |
21372 |
T |
|
| Q |
264 |
cacgtataagttttctgaaatcaaaattggtatggttccagaaaattcattttctcccaagttcatgatttccaattg |
341 |
Q |
| |
|
||| | ||| | || || || |||||||||||||||||||| |||||||||||||| ||||||| || |||||| |
|
|
| T |
21371 |
cacttctaaatattgtggcatgttgattggtatggttccagaaaactcattttctcccaaattcatgaattgcaattg |
21294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 160 - 473
Target Start/End: Complemental strand, 8460396 - 8460083
Alignment:
| Q |
160 |
gatcctgaaagtttgttatgtgcaaggtctaagtgaaacaaataggagagattgaatagttgttgcggaatactcccttcaaattggttagctctcaata |
259 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||||||| | ||| | ||||| ||| | |||||| | |||||||||||||| |||||||||| |
|
|
| T |
8460396 |
gatcctgaaagtttgttatgtgcaaggtccaaatgaaacaaaagagggagttcgaataactgtggtggaatattgccttcaaattggttggctctcaata |
8460297 |
T |
|
| Q |
260 |
tgaccacgtataagttttctgaaatcaaaattggtatggttccagaaaattcattttctcccaagttcatgatttccaattgattaaaatcagaaaagtg |
359 |
Q |
| |
|
||||||| | ||| | ||| || ||||| |||||||||||||||| ||||||||||||||| || ||||||||||| || |||||| | | || |
|
|
| T |
8460296 |
tgaccacttctaaataccgtgacatgttcattggaatggttccagaaaattgattttctcccaagttaatcatttccaattgtttcaaatcaaagaggtc |
8460197 |
T |
|
| Q |
360 |
caatgaaacttcaccagatagcctattactccacaagttaatgtgatataaatttttcaaattcttccaactatgtggaattgatgttgagaaggagttg |
459 |
Q |
| |
|
|| | |||||| |||||||||||||||||||| |||||||||| | |||||| || || || ||||| |||||||||||||| ||||||||||||| |
|
|
| T |
8460196 |
caccggaacttcgccagatagcctattactccataagttaatgtaaaataaatgttccaggctcgtccaaatatgtggaattgatcctgagaaggagttg |
8460097 |
T |
|
| Q |
460 |
taagacaaatcaac |
473 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
8460096 |
taagacaaatcaac |
8460083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University