View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3918_high_37 (Length: 490)

Name: NF3918_high_37
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3918_high_37
NF3918_high_37
[»] chr7 (3 HSPs)
chr7 (135-453)||(28470076-28470394)
chr7 (1-72)||(28470457-28470528)
chr7 (200-375)||(5229937-5230112)
[»] chr8 (5 HSPs)
chr8 (194-376)||(12811915-12812097)
chr8 (225-375)||(34830908-34831058)
chr8 (224-319)||(12772269-12772364)
chr8 (224-319)||(12791129-12791224)
chr8 (300-348)||(27527556-27527604)
[»] chr2 (3 HSPs)
chr2 (246-376)||(30642895-30643024)
chr2 (234-319)||(5546362-5546447)
chr2 (276-321)||(2115269-2115314)
[»] chr5 (1 HSPs)
chr5 (213-371)||(20543499-20543657)
[»] chr6 (1 HSPs)
chr6 (208-321)||(22611520-22611633)
[»] chr4 (2 HSPs)
chr4 (225-374)||(45671368-45671517)
chr4 (246-319)||(42506647-42506720)
[»] chr3 (1 HSPs)
chr3 (237-348)||(38396710-38396821)
[»] chr1 (1 HSPs)
chr1 (208-307)||(46039592-46039691)


Alignment Details
Target: chr7 (Bit Score: 292; Significance: 1e-164; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 135 - 453
Target Start/End: Complemental strand, 28470394 - 28470076
Alignment:
Q  135 ggtgagattttttaatattagatgaatgaaaaagagagagaagggtaccctgaagttgaacttgcaaattcagaaagctttccacgacttgagaaaatga 234  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28470394 ggtgagattttttaatattagatgaatgaaaaagagagagaagggtaccctgaagttgaacttgcaaattcagaaagctttccacgacttgagaaaatga 28470295  T
Q  235 taagagcaatctcagcatcacatagaactgagagttcataggcttttttcagcaaaccatttcttctttttgagaaagtaacttgccggttgattttgtt 334  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28470294 taagagcaatctcagcatcacatagaactgagagttcataggcttttttcagcaaaccatttcttctttttgagaaagtaacttgccggttgattttgtt 28470195  T
Q  335 ttctatcctcttcagttcaaccctccctctacccattttttcttatcactctctcttctgctatgagtctagnnnnnnnnncagtaactgatcagaaagt 434  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||    
T  28470194 ttctatcctcttcagttcaaccctccctctacccattttttcttatcactctctcttctgctatgagtctagaaaaaaaaacagtaactgatcagaaagt 28470095  T
Q  435 ttgtatttatattcgaaat 453  Q
    |||||||||||||||||||    
T  28470094 ttgtatttatattcgaaat 28470076  T

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Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 28470528 - 28470457
Alignment:
Q  1 gaagaagttaaaagtatcagaaattgaaaagatctaaagctaagagaggtttatattgggatttgaaccaac 72  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28470528 gaagaagttaaaagtatcagaaattgaaaagatctaaagctaagagaggtttatattgggatttgaaccaac 28470457  T

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Target: chr7; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 200 - 375
Target Start/End: Complemental strand, 5230112 - 5229937
Alignment:
Q  200 aaattcagaaagctttccacgacttgagaaaatgataagagcaatctcagcatcacatagaactgagagttcataggcttttttcagcaaaccatttctt 299  Q
    ||||||| |||||||||||||| | ||||| ||||||||||||| |||||||||||| ||||| || |||||||| ||||| || || | ||||||||||    
T  5230112 aaattcataaagctttccacgagtggagaagatgataagagcaacctcagcatcacaaagaacagaaagttcataagctttcttaagaagaccatttctt 5230013  T
Q  300 ctttttgagaaagtaacttgccggttgattttgttttctatcctcttcagttcaaccctccctctacccatttttt 375  Q
    || || |  || |||||||| | ||| || ||||| |||||||||||||  ||||| || ||||| ||||||||||    
T  5230012 ctcttagcaaatgtaacttgtctgtttatcttgttctctatcctcttcaactcaactcttcctcttcccatttttt 5229937  T

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Target: chr8 (Bit Score: 83; Significance: 4e-39; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 194 - 376
Target Start/End: Original strand, 12811915 - 12812097
Alignment:
Q  194 acttgcaaattcagaaagctttccacgacttgagaaaatgataagagcaatctcagcatcacatagaactgagagttcataggcttttttcagcaaacca 293  Q
    |||| |||||||| | || || ||||| || |||||||||||||| ||||  ||||||||||| ||||| || |||||||| ||||| || |||||||||    
T  12811915 acttccaaattcatagagtttgccacggctagagaaaatgataagggcaacttcagcatcacagagaacagacagttcataagctttcttgagcaaacca 12812014  T
Q  294 tttcttctttttgagaaagtaacttgccggttgattttgttttctatcctcttcagttcaaccctccctctacccattttttc 376  Q
    |||||||||||||||||||| || |||||||| |||||||| ||||| ||||||| |||||| || ||||| |||||||||||    
T  12812015 tttcttctttttgagaaagttacctgccggtttattttgttctctattctcttcaattcaactcttcctcttcccattttttc 12812097  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 225 - 375
Target Start/End: Original strand, 34830908 - 34831058
Alignment:
Q  225 gagaaaatgataagagcaatctcagcatcacatagaactgagagttcataggcttttttcagcaaaccatttcttctttttgagaaagtaacttgccggt 324  Q
    ||||| |||||||||||||  ||||||||||| ||||| || |||||||| ||||||||||  | ||| || |||| ||| | ||| |||||||| | ||    
T  34830908 gagaagatgataagagcaacttcagcatcacaaagaacagaaagttcataagcttttttcaaaagaccgttccttcgtttagcgaaggtaacttgtctgt 34831007  T
Q  325 tgattttgttttctatcctcttcagttcaaccctccctctacccatttttt 375  Q
    |||||||||| || || |||||||  ||||| || ||||| ||||||||||    
T  34831008 tgattttgttctcaattctcttcaactcaactcttcctcttcccatttttt 34831058  T

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Target: chr8; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 224 - 319
Target Start/End: Complemental strand, 12772364 - 12772269
Alignment:
Q  224 tgagaaaatgataagagcaatctcagcatcacatagaactgagagttcataggcttttttcagcaaaccatttcttctttttgagaaagtaacttg 319  Q
    ||||||||  |||||||||| ||||||||||||||  ||||| |||||| |||| || |||| ||||||||||||||| |||||||| || |||||    
T  12772364 tgagaaaacaataagagcaacctcagcatcacataacactgacagttcaaaggccttcttcaacaaaccatttcttctctttgagaatgttacttg 12772269  T

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Target: chr8; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 224 - 319
Target Start/End: Complemental strand, 12791224 - 12791129
Alignment:
Q  224 tgagaaaatgataagagcaatctcagcatcacatagaactgagagttcataggcttttttcagcaaaccatttcttctttttgagaaagtaacttg 319  Q
    ||||||||  |||||||||| ||||||||||||||  ||||| |||||| |||| || |||| ||||||||||||||| |||||||| || |||||    
T  12791224 tgagaaaacaataagagcaacctcagcatcacataacactgacagttcaaaggccttcttcaacaaaccatttcttctctttgagaatgttacttg 12791129  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 300 - 348
Target Start/End: Original strand, 27527556 - 27527604
Alignment:
Q  300 ctttttgagaaagtaacttgccggttgattttgttttctatcctcttca 348  Q
    ||||| ||||||||||| || || ||||| |||||||||||||||||||    
T  27527556 cttttagagaaagtaacctgacgattgatcttgttttctatcctcttca 27527604  T

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Target: chr2 (Bit Score: 59; Significance: 9e-25; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 246 - 376
Target Start/End: Original strand, 30642895 - 30643024
Alignment:
Q  246 tcagcatcacatagaactgagagttcataggcttttttcagcaaaccatttcttctttttgagaaagtaacttgccggttgattttgttttctatcctct 345  Q
    |||||||||||  |||| || |||||||| |||||||| ||||||||||||||||| |||||||||||  ||||| |||| |||||||| ||||| ||||    
T  30642895 tcagcatcacag-gaacagacagttcataagcttttttgagcaaaccatttcttctctttgagaaagttgcttgctggtttattttgttctctattctct 30642993  T
Q  346 tcagttcaaccctccctctacccattttttc 376  Q
    ||| |||||| || ||||| |||||||||||    
T  30642994 tcaattcaactcttcctcttcccattttttc 30643024  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 234 - 319
Target Start/End: Complemental strand, 5546447 - 5546362
Alignment:
Q  234 ataagagcaatctcagcatcacatagaactgagagttcataggcttttttcagcaaaccatttcttctttttgagaaagtaacttg 319  Q
    ||||||||||  || |||||||| ||||| || | |||||| ||||| |||| ||||||||||||||||||  ||||||| |||||    
T  5546447 ataagagcaacttctgcatcacaaagaacagataattcatatgctttcttcaacaaaccatttcttcttttgcagaaagttacttg 5546362  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 321
Target Start/End: Complemental strand, 2115314 - 2115269
Alignment:
Q  276 gcttttttcagcaaaccatttcttctttttgagaaagtaacttgcc 321  Q
    ||||| |||| ||| ||||||||||||||||||||||| |||||||    
T  2115314 gctttcttcaacaatccatttcttctttttgagaaagtcacttgcc 2115269  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 213 - 371
Target Start/End: Original strand, 20543499 - 20543657
Alignment:
Q  213 tttccacgacttgagaaaatgataagagcaatctcagcatcacatagaactgagagttcataggcttttttcagcaaaccatttcttctttttgagaaag 312  Q
    |||||||| || |||||||| || ||||||| |||||||||||| || |  ||||||||||| || || |||||||  ||||||||||| ||||  || |    
T  20543499 tttccacggctagagaaaataatgagagcaacctcagcatcacaaaggagagagagttcataagccttcttcagcattccatttcttctctttgcaaatg 20543598  T
Q  313 taacttgccggttgattttgttttctatcctcttcagttcaaccctccctctacccatt 371  Q
    ||||||| || || |||||||| || |||||||| || || ||| | || |||||||||    
T  20543599 taacttgacgatttattttgttctcaatcctctttagctctacctttcccctacccatt 20543657  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 208 - 321
Target Start/End: Complemental strand, 22611633 - 22611520
Alignment:
Q  208 aaagctttccacgacttgagaaaatgataagagcaatctcagcatcacatagaactgagagttcataggcttttttcagcaaaccatttcttctttttga 307  Q
    ||||||| ||||| ||||| ||||||||||| ||||  |||||||||||||||||  | || ||| ||||||| |||| ||| ||| ||||||| |||||    
T  22611633 aaagcttgccacggcttgaaaaaatgataagtgcaacttcagcatcacatagaacacaaagctcaaaggctttcttcaacaatccacttcttctctttga 22611534  T
Q  308 gaaagtaacttgcc 321  Q
    ||| || |||||||    
T  22611533 gaatgttacttgcc 22611520  T

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Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 225 - 374
Target Start/End: Complemental strand, 45671517 - 45671368
Alignment:
Q  225 gagaaaatgataagagcaatctcagcatcacatagaactgagagttcataggcttttttcagcaaaccatttcttctttttgagaaagtaacttgccggt 324  Q
    ||||| |||||||||||||  ||||||||||| |||||||| |||||||| || || || || | |||||||||||| || |  || || ||||| |  |    
T  45671517 gagaagatgataagagcaacttcagcatcacaaagaactgaaagttcataagccttcttgagtacaccatttcttctcttagcaaatgtgacttgtctat 45671418  T
Q  325 tgattttgttttctatcctcttcagttcaaccctccctctacccattttt 374  Q
    | | |||||| ||||| ||||| |||||||| |||||||| |||||||||    
T  45671417 taactttgttctctattctctttagttcaactctccctcttcccattttt 45671368  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 246 - 319
Target Start/End: Original strand, 42506647 - 42506720
Alignment:
Q  246 tcagcatcacatagaactgagagttcataggcttttttcagcaaaccatttcttctttttgagaaagtaacttg 319  Q
    ||||||||||| || ||||| |||||| |||| ||||| ||||  ||||||||||| ||||||||||| |||||    
T  42506647 tcagcatcacaaagcactgaaagttcaaaggcctttttaagcagtccatttcttctctttgagaaagttacttg 42506720  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 237 - 348
Target Start/End: Complemental strand, 38396821 - 38396710
Alignment:
Q  237 agagcaatctcagcatcacatagaactgagagttcataggcttttttcagcaaaccatttcttctttttgagaaagtaacttgccggttgattttgtttt 336  Q
    ||||||| ||| |||||||| ||||| || |||||||| ||||||||||  | ||||||||||| |||||  || |||||||| | |||||| ||||| |    
T  38396821 agagcaacctctgcatcacaaagaacagaaagttcataagcttttttcaaaagaccatttcttcgttttgcaaaggtaacttgtctgttgatcttgttct 38396722  T
Q  337 ctatcctcttca 348  Q
    | || |||||||    
T  38396721 caattctcttca 38396710  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 208 - 307
Target Start/End: Original strand, 46039592 - 46039691
Alignment:
Q  208 aaagctttccacgacttgagaaaatgataagagcaatctcagcatcacatagaactgagagttcataggcttttttcagcaaaccatttcttctttttga 307  Q
    ||||||| ||| |||| ||||| |||||||||||||  |||||||||||||  || || |||||| | ||||| |||| ||||||| ||||||| |||||    
T  46039592 aaagcttgccaagactggagaagatgataagagcaacttcagcatcacataacacagaaagttcaaaagctttcttcaacaaaccacttcttctctttga 46039691  T

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