View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_high_45 (Length: 459)
Name: NF3918_high_45
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_high_45 |
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Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 20 - 451
Target Start/End: Complemental strand, 37787858 - 37787424
Alignment:
| Q |
20 |
acatgcacatatataagnnnnnnntaaagaacatcaaaactcttgtgacacattaaatgtggtaataaagtaactttatttacatttctaataaataaag |
119 |
Q |
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| T |
37787858 |
acatgcacatatataagaaaaaaataaagaacatcaaaactcatgtgacacattaaatgtggtaataaagtaactttatttacatttctattaaataaag |
37787759 |
T |
|
| Q |
120 |
ggaacttctatggtagtttcttacccctagtatggtggttttgtagttctcatttcccaggattcgaccctcctcgtaatcaaagaaagataaaacaaat |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
37787758 |
ggaacttctatggtagtttcttacccctagtatggtggttttgtagttctcatttcccaggattcgaccctcctcgtaatcaaagaaagaaaaaacaaat |
37787659 |
T |
|
| Q |
220 |
cgacta---tttaatccnnnnnnnnnnnnnnnnnncaatttgattctttaggttctaaaatacaattaaacttttaattgtaagatggacacataaactt |
316 |
Q |
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| |||| |||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
37787658 |
ctactactctttaatcctttttttcgttttcttttcaatttgattatttaggttctaaaatactattaaacttttaattgtaagatggacacataaactt |
37787559 |
T |
|
| Q |
317 |
tcaattatttaatctctctcacttgctccaacaatttacaaatcgaaaaattcttctctggaagatattgtttgcgatctcaattacttcttacaacata |
416 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |
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| T |
37787558 |
tcaattatttaatctctctcactttctccaacaatttacaaatcgaaaaattcttctcttgaagatactgtttgcgatctcaattacttcttacaacata |
37787459 |
T |
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| Q |
417 |
atttgttttcttcggttcttttcctctttcatctc |
451 |
Q |
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|||| |||||||||||||||||||||||||||||| |
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| T |
37787458 |
attttttttcttcggttcttttcctctttcatctc |
37787424 |
T |
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