View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3918_high_5 (Length: 1744)
Name: NF3918_high_5
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_high_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-169; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 56043315 - 56043616
Alignment:
| Q |
1 |
actcaaccactaactatctctgctattctcatgcaaatcgctgttcttcccatcggaaagttcatggccgccactcttcccaccaaagagtataactttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56043315 |
actcaaccactaactatctctgctattctcatgcaaatcgctgttcttcccatcggaaagttcatggccgccactcttcccaccaaagagtataactttt |
56043414 |
T |
|
| Q |
101 |
ttgggcggtggcgtttcacgttgaatcctggtccgtttaatatgaaggagcatgttattatcactatttttgctaactgtggtgtttctcaaggtggtgg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56043415 |
ttgggcggtggcgtttcacgttgaatcctggtccgtttaatatgaaggagcatgttattatcactatttttgctaactgtggtgtttctcaaggtggtgg |
56043514 |
T |
|
| Q |
201 |
tgatgcttactccattggtgctattactattatgaaagcttattacaaacaatctctcagttttctccttgctctattcatcgtcttaaccacacaggtt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56043515 |
tgatgcttactccattggtgctattactattatgaaagcttattacaaacaatctctcagttttctccttgctctattcatcgtcttaaccacacaggtt |
56043614 |
T |
|
| Q |
301 |
ct |
302 |
Q |
| |
|
|| |
|
|
| T |
56043615 |
ct |
56043616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000003
Query Start/End: Original strand, 1079 - 1218
Target Start/End: Original strand, 14176057 - 14176196
Alignment:
| Q |
1079 |
atcagacatgaaaagacagttcctggaaccccacagcacaatggcgtagccgagaggatgaaccgcaccattgtggagaaggtgagaagcatgctcagaa |
1178 |
Q |
| |
|
||||||||||| ||||| |||||||| |||||||| || ||||| ||||| || || || ||| | |||||| ||||||| |||||| | ||||| | || |
|
|
| T |
14176057 |
atcagacatgagaagacggttcctggcaccccacaacataatggtgtagctgaaagaatcaacagaaccattatggagaaagtgagatgtatgctgaaaa |
14176156 |
T |
|
| Q |
1179 |
tggctaaactgcctaagtcattctggggtgaagcagttca |
1218 |
Q |
| |
|
||||||| ||||| ||| |||| ||||| ||||| ||||| |
|
|
| T |
14176157 |
tggctaagctgccaaagccattttggggagaagctgttca |
14176196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000003
Query Start/End: Original strand, 1079 - 1218
Target Start/End: Complemental strand, 28609820 - 28609681
Alignment:
| Q |
1079 |
atcagacatgaaaagacagttcctggaaccccacagcacaatggcgtagccgagaggatgaaccgcaccattgtggagaaggtgagaagcatgctcagaa |
1178 |
Q |
| |
|
||||||||||| ||||| |||||||| |||||||| || ||||| ||||| || || || ||| | |||||| ||||||| |||||| | ||||| | || |
|
|
| T |
28609820 |
atcagacatgagaagacggttcctggcaccccacaacataatggtgtagctgaaagaatcaacagaaccattatggagaaagtgagatgtatgctgaaaa |
28609721 |
T |
|
| Q |
1179 |
tggctaaactgcctaagtcattctggggtgaagcagttca |
1218 |
Q |
| |
|
||||||| ||||| ||| |||| ||||| ||||| ||||| |
|
|
| T |
28609720 |
tggctaagctgccaaagccattttggggagaagctgttca |
28609681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 0.000000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000003
Query Start/End: Original strand, 1079 - 1218
Target Start/End: Original strand, 15298577 - 15298716
Alignment:
| Q |
1079 |
atcagacatgaaaagacagttcctggaaccccacagcacaatggcgtagccgagaggatgaaccgcaccattgtggagaaggtgagaagcatgctcagaa |
1178 |
Q |
| |
|
||||||||||| ||||| |||||||| |||||||| || ||||| ||||| || || || ||| |||||| ||||||| |||||| | ||||| | || |
|
|
| T |
15298577 |
atcagacatgagaagacggttcctggcaccccacaacataatggtgtagctgaaagaatcaacataaccattatggagaaagtgagatgtatgctgaaaa |
15298676 |
T |
|
| Q |
1179 |
tggctaaactgcctaagtcattctggggtgaagcagttca |
1218 |
Q |
| |
|
||||||| ||||| ||| |||| ||||||||||| ||||| |
|
|
| T |
15298677 |
tggctaagctgccaaagccattttggggtgaagctgttca |
15298716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000007
Query Start/End: Original strand, 1079 - 1218
Target Start/End: Original strand, 12932787 - 12932926
Alignment:
| Q |
1079 |
atcagacatgaaaagacagttcctggaaccccacagcacaatggcgtagccgagaggatgaaccgcaccattgtggagaaggtgagaagcatgctcagaa |
1178 |
Q |
| |
|
||||||||||| ||||| |||||||| |||||||| || ||||| ||||| || || || ||| | |||||| ||||||| |||||| | ||||| | || |
|
|
| T |
12932787 |
atcagacatgagaagacggttcctggcaccccacaacataatggtgtagctgaaagaatcaacagaaccattatggagaaagtgagatgtatgctgaaaa |
12932886 |
T |
|
| Q |
1179 |
tggctaaactgcctaagtcattctggggtgaagcagttca |
1218 |
Q |
| |
|
||||||| ||||| ||| |||| |||| ||||| ||||| |
|
|
| T |
12932887 |
tggctaagctgccaaagccattttgggtagaagctgttca |
12932926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University