View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_high_50 (Length: 451)
Name: NF3918_high_50
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_high_50 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 11 - 451
Target Start/End: Complemental strand, 28428624 - 28428175
Alignment:
| Q |
11 |
caaaggacacgtatgctatatggtttgtaaagtttaaatggaaacattttgtaattgattttattttccattaaggccaatgtgattttggcatgtgatt |
110 |
Q |
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| T |
28428624 |
caaaggacacgtatgctatatggtttgtaaagtttaaatggaaacattttgtaattgattttattttccattaaggccaatgtgattttggcatgtgatt |
28428525 |
T |
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| Q |
111 |
aatttgtggactgg-atctcttggagcaattacttttggcttccgtatgtgaaaacagcgtatcaaagcaaaatcaaatcaattctctttggtaaaattg |
209 |
Q |
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| T |
28428524 |
aatttgtggactggaatctcttggagc-attacttttggcttccgtatgtgaaaacagcgtatcaaagcaaaatcaaatcaattctctttggtaaaattg |
28428426 |
T |
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| Q |
210 |
ccttatgttcagatatact------atatga------cattgattgatgtttccataagcttcgagaccaacactaatcatataggagaattgcttttgt |
297 |
Q |
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| T |
28428425 |
ccttatgttcagatatactccaacactatgagaattgctttgatagatgtgtccataagcttcgagaccaacactaatcatatatgagaattgcttttgt |
28428326 |
T |
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| Q |
298 |
gnnnnnnnncttcttccaaaaacacacatggaaaatacgtttttgcctccgatagaagttaactatcgttcagtcttttcggctgaagttaactactgcg |
397 |
Q |
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| T |
28428325 |
gttttttt--ttcttccaaaaa-acacatggaaaatacatttttgcctccgacagaagttaactgtcgttcagtcttttcggctgaagttaactactgcg |
28428229 |
T |
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| Q |
398 |
actcagctgcacttaagttcgattcctgacagagcattaattgtgattttgcgc |
451 |
Q |
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| T |
28428228 |
actcagctgcacttaaattcgatttctgacagagcattaattgtgattttgcgc |
28428175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 317 - 393
Target Start/End: Complemental strand, 20807719 - 20807643
Alignment:
| Q |
317 |
aaacacacatggaaaatacgtttttgcctccgatagaagttaactatcgttcagtcttttcggctgaagttaactac |
393 |
Q |
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| T |
20807719 |
aaacacacatggaaaatacgtttttgcctccaacggtggttaactaccgttcagttttttcggcagtagttaactac |
20807643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 404 - 450
Target Start/End: Original strand, 24204970 - 24205016
Alignment:
| Q |
404 |
ctgcacttaagttcgattcctgacagagcattaattgtgattttgcg |
450 |
Q |
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| T |
24204970 |
ctgcacttaagttcggtttctggcagagcatcaattgtgattttgcg |
24205016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 399 - 447
Target Start/End: Original strand, 18966562 - 18966610
Alignment:
| Q |
399 |
ctcagctgcacttaagttcgattcctgacagagcattaattgtgatttt |
447 |
Q |
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| T |
18966562 |
ctcagctgcacttaagttcggttcctagcagagcatcaattgtgatttt |
18966610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 399 - 451
Target Start/End: Original strand, 30463408 - 30463460
Alignment:
| Q |
399 |
ctcagctgcacttaagttcgattcctgacagagcattaattgtgattttgcgc |
451 |
Q |
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| T |
30463408 |
ctcatctgcacttaagttcggttcctagcagagcatcaattgtgattatgcgc |
30463460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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