View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_high_51 (Length: 451)
Name: NF3918_high_51
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_high_51 |
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Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 72 - 432
Target Start/End: Complemental strand, 24363510 - 24363156
Alignment:
| Q |
72 |
cctattgtgagtgctgcagtagaggatccaggaccctcaaatttacattgtgatatatttcaaataagtgtaaaacactcatactactaatttgcttatt |
171 |
Q |
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| T |
24363510 |
cctattgtgagtgctgcagtagaggatccaggaccctcaaatttacattgtgatatattttaaataagtgtaaaacactcatagtactaatttgcttatt |
24363411 |
T |
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| Q |
172 |
cattaattatacttgtctaactatcacatttttccatgttgattttgttgctcatttnnnnnnnnnnnnngttaatgtatcatagggccactacctttag |
271 |
Q |
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| T |
24363410 |
cattaattatacttgtctaactatcacatttttccatgttgattttgttgctcatttaaaaaaaa------ttaatgtatcatagggccactacctttag |
24363317 |
T |
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| Q |
272 |
atagttcgttactttggtggttgcactttcttaatttattgatagttttgtattggaaagttgttgttggtaggacccctcttatctaactaaagtcatg |
371 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24363316 |
atagttcgttactttggtggttgcactttcttaatttattgatagttttgtattggaaagttgttgttggtaggacccctcttatctaactaaagtcatg |
24363217 |
T |
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| Q |
372 |
cttgcttacttatgaggtaatcaacttgaataagaatagagctaaactttggcaagataac |
432 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24363216 |
cttgcttacttatgaggtaatcaacttgaataagaatagagctaaactttggcaagataac |
24363156 |
T |
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