View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_high_56 (Length: 443)
Name: NF3918_high_56
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_high_56 |
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Alignment Details
Target: chr1 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 14 - 383
Target Start/End: Complemental strand, 8439174 - 8438811
Alignment:
| Q |
14 |
caaaggtccgggtcttctatgaggaaggtatttaatttgatcaatgcaatatcattattttccttttctattattagtgataaaatcaccacttaacaca |
113 |
Q |
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| T |
8439174 |
caaaggtccgggtcttctatgagaaaggtattt-----gatcaatgcaatatcattattttccttttctattattagtgataaaatcaccactgaacaaa |
8439080 |
T |
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| Q |
114 |
tcttttacaattattttaaaatggattgggtcccagctgaaagaagtgaattccttaagcttatttacaatatcattggcttgaaacgattatctaagta |
213 |
Q |
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| T |
8439079 |
tcttttacaattattttaaaatggattgggtcccagctgaaagaagtgaattccttaagcttatttacaatatcattggcttgaaacgattatctaagt- |
8438981 |
T |
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| Q |
214 |
aaagatagaaacaacctgcacaaaacttagaaataaaataaataggggtttgcccctatgtccgatcatcacattcatatctcacttaaactatatttaa |
313 |
Q |
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| T |
8438980 |
aaagatagaaacaacctgcacaaaacttagaaatacaataaataggggtttgcccctatgtctgatcatcacattcatatctcacttaaactatatttaa |
8438881 |
T |
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| Q |
314 |
attaggttaggattgtctattcttgatgactttctctctatccttttttaaactaactctatctctcatc |
383 |
Q |
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| T |
8438880 |
attaggttaggattgtctatttttgatgactttctctctatccttctttaaactaactctatctctcatc |
8438811 |
T |
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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 48 - 130
Target Start/End: Original strand, 31947332 - 31947416
Alignment:
| Q |
48 |
atttgatcaatgcaatatcattattttccttttc--tattattagtgataaaatcaccacttaacacatcttttacaattatttt |
130 |
Q |
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| T |
31947332 |
attttatcaatgcaatatcattgttttcctttctattattattagtgacaaaatcaccattgaacatatctttcacaatcatttt |
31947416 |
T |
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