View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_high_62 (Length: 426)
Name: NF3918_high_62
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_high_62 |
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Alignment Details
Target: chr2 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 16 - 414
Target Start/End: Original strand, 9413547 - 9413945
Alignment:
| Q |
16 |
cagagatagcaccatcttgccaaagatgaaccaaagaagtagttccaacaggaagagtaatacttgcataaatcgtaacctcgttattttcatgtgtagc |
115 |
Q |
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| T |
9413547 |
cagacatagcaccatcttgccaaagatgaaccaaagaaggagttccaacaggaagagtaatacttgcataaatcgtaacctcgttattttcatgtgtagc |
9413646 |
T |
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| Q |
116 |
actcaaccttgaatgaggataactaatattactctctgctaattgtgtccctgaaccggcaattgatgaagtataagctttaggagttccactagattgt |
215 |
Q |
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| T |
9413647 |
aatcaaccctgaatgaggataactaatattactctctgctaattgtgtccttgaattggcaattgatgaagtataagctttaggagttccactagattgt |
9413746 |
T |
|
| Q |
216 |
ggaattgcaaccaaagcttgtgctccattcatggaagatgtgagatcattgtttcggttaatagcccatgctacccatcggtttgtgtctgttatacctt |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9413747 |
agaattgcaaccaaagcttgtgctccattcatggaagatgcgagatcattgtttgggttaatagcccatgctacccatcggtttgtgtctgttatacctt |
9413846 |
T |
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| Q |
316 |
tgtgtctgaatgctatgtcgagttttcctgttgtttggtcgtatgtccagtggagataggaggtgagttgtggtagatcacgacatgatgtgaaaattg |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
9413847 |
tgtgtctgaatgctatgtcgagttttcctgttgtttggtcgtatgtccagtggagatacgaggtgagttgtggtagatcacgacatgatgtgaaaattg |
9413945 |
T |
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