View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_high_63 (Length: 426)
Name: NF3918_high_63
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_high_63 |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 14 - 270
Target Start/End: Complemental strand, 34821426 - 34821170
Alignment:
| Q |
14 |
gaaccacaaaaaatttaaaaagttgagctttagtgtttcgcctttagatcatcttgagacgatgagtaacatttcaccggaagataagcaagactaagga |
113 |
Q |
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| T |
34821426 |
gaaccacaaaaaatttaaaaagttgagctttagtgttttgcctttagatcatcttgagacgatgagtaacatttcaccggaagataagtaagactaagga |
34821327 |
T |
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| Q |
114 |
ggagaaacaaatgtccaatataatatctataatccattttcaagctagcaaaatgacacaacaacnnnnnnnggttaataacatgtgttaatatatgcat |
213 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
34821326 |
ggagaaacaaatgcccaatataatatctataatccattttcaagctagcaaaatgacacaacaacaaaaaaaggttaataacatgtgttaatatatgcat |
34821227 |
T |
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| Q |
214 |
gcatgcaagttcctttaagtaaacttgtgtgttttatatcatatttgtttccccttc |
270 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34821226 |
gcatgcaagttcctttaagtaaacttgtgtgttttatatcatatttgtttccccttc |
34821170 |
T |
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