View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_high_66 (Length: 419)
Name: NF3918_high_66
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_high_66 |
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Alignment Details
Target: chr4 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 19 - 408
Target Start/End: Complemental strand, 52580552 - 52580163
Alignment:
| Q |
19 |
gtggaggtgttggtggtggattgatgaaacttcgaggtgatgtagaaatgtgcggttacagagatgtggagttgatgtggaacatgttaggcttaaacct |
118 |
Q |
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| T |
52580552 |
gtggaggtgttggtggtggattgatgaaacttcgaggtgatgtagaaatgtgcggttacagagatgtggagttgatgtggaacatgttaggcttaaacct |
52580453 |
T |
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| Q |
119 |
caagcctgaggcagtggaaactccacgaagcactaagccaaaacttacaaggcgtagctgcaagcaaagattcaattctaagcttttcttttggactaac |
218 |
Q |
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| T |
52580452 |
caagcctgaggcagtggaaactccacgaagcactaagccaaaacttacaaggcgtagctgcaagcaaagattcaattctaagcttttcttttggactaac |
52580353 |
T |
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| Q |
219 |
caataataaacttgtgcctcaaatagtaaattttgaaagttttgtagtgggcacaatgtttattttgtacatgatgatataatcataatgaattttataa |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52580352 |
caataataaacttgtgcctcaaatagtaaattttgaaagttttgtagtgggcacaatgtttattttgtacatgatgatataatcataatgaattttataa |
52580253 |
T |
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| Q |
319 |
acttatgtaaatacaatttatacaagtaactgttaatttgtctctctatacattatacagataatcgaaagaaacgtcttcttgtttcat |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52580252 |
acttatgtaaatacaatttatacaagtaactgttaatttgtctctctatacattatacagataatcgaaagaaacgtcttcttgtttcat |
52580163 |
T |
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