View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_high_7 (Length: 1246)
Name: NF3918_high_7
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-169; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 56043315 - 56043616
Alignment:
| Q |
1 |
actcaaccactaactatctctgctattctcatgcaaatcgctgttcttcccatcggaaagttcatggccgccactcttcccaccaaagagtataactttt |
100 |
Q |
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| T |
56043315 |
actcaaccactaactatctctgctattctcatgcaaatcgctgttcttcccatcggaaagttcatggccgccactcttcccaccaaagagtataactttt |
56043414 |
T |
|
| Q |
101 |
ttgggcggtggcgtttcacgttgaatcctggtccgtttaatatgaaggagcatgttattatcactatttttgctaactgtggtgtttctcaaggtggtgg |
200 |
Q |
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| T |
56043415 |
ttgggcggtggcgtttcacgttgaatcctggtccgtttaatatgaaggagcatgttattatcactatttttgctaactgtggtgtttctcaaggtggtgg |
56043514 |
T |
|
| Q |
201 |
tgatgcttactccattggtgctattactattatgaaagcttattacaaacaatctctcagttttctccttgctctattcatcgtcttaaccacacaggtt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56043515 |
tgatgcttactccattggtgctattactattatgaaagcttattacaaacaatctctcagttttctccttgctctattcatcgtcttaaccacacaggtt |
56043614 |
T |
|
| Q |
301 |
ct |
302 |
Q |
| |
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|| |
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| T |
56043615 |
ct |
56043616 |
T |
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