View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_high_70 (Length: 402)
Name: NF3918_high_70
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_high_70 |
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Alignment Details
Target: chr3 (Bit Score: 352; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 15 - 390
Target Start/End: Complemental strand, 35941033 - 35940659
Alignment:
| Q |
15 |
atgtcttttatagtttttatgttcttttatgtatatctttatatttacattatgatccttgagattgtgaaaatttaggaggaatatagttaccatgtga |
114 |
Q |
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| T |
35941033 |
atgtcttttatagtttttatgttcttttatgtatatctttatatttacattatgatccttgagattgtgaaaatttaggaggaatatagttaccatgtga |
35940934 |
T |
|
| Q |
115 |
ttgcaaagacctgaatattgcaactacatttacattagtaagtaaatttacaacaccacacaagataagaagaatttatagattatcagttaatatttga |
214 |
Q |
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| T |
35940933 |
ttgcaaagacctgaatattgcaactacatttgcattagtaagtaaatttacaacaccacacaagataagaagaatttatagattatcagttaatatttga |
35940834 |
T |
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| Q |
215 |
ttgatgacataacttcattttcatagtagtggtgaaaagtttacctaggctcgaaaagttttaacaaatttcactaacaagtttatgatttgagtctaca |
314 |
Q |
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| T |
35940833 |
ttgatgacataacttcatattcatagtagtggtgaaaagtttacctaggctcaaaaag-tttaacaaatttcactaacaagtttatgatttgagtctaca |
35940735 |
T |
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| Q |
315 |
gaagctcaaaaagtttacctagcctctcaagtttaacaaatttgattacgacaacataatgtttgaaccacacagg |
390 |
Q |
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| T |
35940734 |
gaagctcaaaaagtttacctagcctctcaagtttaacaaattcgattacgacaacataatgtttgaaccacacagg |
35940659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 153 - 245
Target Start/End: Complemental strand, 35915785 - 35915690
Alignment:
| Q |
153 |
taagtaaatttacaacaccacacaagataagaagaatttata----gattatcagttaatatttgattgatgacataacttcattttcatagtagtg |
245 |
Q |
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| T |
35915785 |
taagaaaatttgcatcaccacacacgataaaaagaatttatatatagattattagtta-tatttgattgatgacataactacattttcatagtagtg |
35915690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 150 - 245
Target Start/End: Complemental strand, 35935318 - 35935223
Alignment:
| Q |
150 |
tagtaagtaaatttacaacaccacacaagataagaagaatttatagattatcagttaatatttgattgatgacataacttcattttcatagtagtg |
245 |
Q |
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| T |
35935318 |
tagtaagccaatatacaacaccagacatgataagaagtattgatcgattactacttaatgtttgatcgataacataacttcattttcatagtagtg |
35935223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 196 - 244
Target Start/End: Complemental strand, 35928716 - 35928667
Alignment:
| Q |
196 |
attatcagttaatattt-gattgatgacataacttcattttcatagtagt |
244 |
Q |
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| T |
35928716 |
attattagttaatattttgattgatgacataacttgattttcatagtagt |
35928667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 390
Target Start/End: Complemental strand, 35935198 - 35935090
Alignment:
| Q |
282 |
atttcactaacaagtttatgatttgagtctacagaagctcaaaaagtttacctagcctctcaagtttaacaaatttgattacgacaacataatgtttgaa |
381 |
Q |
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|||| |||||||||| ||||| | ||||||||||||||| | | |||||||||| |||| ||||| | ||||||||| || |||||||| |||||| |
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| T |
35935198 |
attttactaacaagtatatgagtcgagtctacagaagctacacatgtttacctagactctagagtttgaaaaatttgatgctgataacataatatttgaa |
35935099 |
T |
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| Q |
382 |
ccacacagg |
390 |
Q |
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|||||||| |
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| T |
35935098 |
acacacagg |
35935090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 306 - 348
Target Start/End: Complemental strand, 35921764 - 35921722
Alignment:
| Q |
306 |
gagtctacagaagctcaaaaagtttacctagcctctcaagttt |
348 |
Q |
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| T |
35921764 |
gagtctacagaagctcaacaagtttacttagactctcaagttt |
35921722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 211 - 245
Target Start/End: Complemental strand, 35922085 - 35922051
Alignment:
| Q |
211 |
ttgattgatgacataacttcattttcatagtagtg |
245 |
Q |
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| T |
35922085 |
ttgattgatgacataagttcattttcatagtagtg |
35922051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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