View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_high_71 (Length: 400)
Name: NF3918_high_71
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_high_71 |
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Alignment Details
Target: chr8 (Bit Score: 157; Significance: 2e-83; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 201 - 394
Target Start/End: Complemental strand, 8577867 - 8577678
Alignment:
| Q |
201 |
tgtaaataatattttgaccctcaaaattgtaaagattgagcaatttagtcctttaaatttataaaatacaaattagtctattaaataaattaaagaaaat |
300 |
Q |
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| T |
8577867 |
tgtaaataatattttgaccctcaaaattgtaaagattgagcaatttagtcctttaaatttataaaatacaaattagtctattaaat----taaagaaaat |
8577772 |
T |
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| Q |
301 |
caatcaattgagtcacacagtcaaaatatctttttaataattatccatcaaaatcaatggaaacatatatattgatttgatttgtctctgctcc |
394 |
Q |
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| T |
8577771 |
caatgaattgagtcacacaatcaaaatatctttttaataattatccatcaaaattaatggaaacatatatattgatttgatttctctctactcc |
8577678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 18 - 177
Target Start/End: Complemental strand, 8578021 - 8577862
Alignment:
| Q |
18 |
tataacagataatttaaataattaatagagttggttagtaataatcattgttttaagagattataacgtttaggaactttgagcaaatggtttaacaaaa |
117 |
Q |
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| T |
8578021 |
tataacagataatttaaataattaatagagttggttagtaataatcattgttttaagagattataacgtttagtaactttgagcaaatggtttaacaaaa |
8577922 |
T |
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| Q |
118 |
agaaagcggctaatctagttgatagtaaattattaggacaaatatgaagtaatttgtaaa |
177 |
Q |
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| T |
8577921 |
agaaagcggctaaactagctgatagtaaattcttaggacaaatatgaagtaatttgtaaa |
8577862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 225 - 267
Target Start/End: Complemental strand, 8603247 - 8603205
Alignment:
| Q |
225 |
aattgtaaagattgagcaatttagtcctttaaatttataaaat |
267 |
Q |
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| T |
8603247 |
aattgtaaagattgagcaatttagtcttttaaatatacaaaat |
8603205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 29086853 - 29086804
Alignment:
| Q |
219 |
cctcaaaattgtaaagattgagcaatttagtcctttaaatttataaaata |
268 |
Q |
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| T |
29086853 |
cctcaaaattgtaatgatcgagcaatttagtcccttcaatttacaaaata |
29086804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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