View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_high_85 (Length: 358)
Name: NF3918_high_85
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_high_85 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 38418539 - 38418827
Alignment:
| Q |
1 |
caaaagaaaaagaatcggagattgggttaagtatgatacaataaatagcataggtatacataacataacatgatcctatttgcaatttattgatttaatt |
100 |
Q |
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| T |
38418539 |
caaaagaaaaagaatcggagattgggttaattatgatacaataaatagcataggtatacataacat-----gatcctatttgcaatttattgatttaatt |
38418633 |
T |
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| Q |
101 |
gagcnnnnnnnncaacatcaaaacatagaacatcatatgataccagtgtatgtaggtcattccggtcttatccaacacaaat-aaaagatgaccctaaat |
199 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |
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| T |
38418634 |
gagcaaagaaaacaacatcaaaacatagaacatcatatgataccagtgtatgtaggtcattccggtcttatccaacacaaataaaaagatcaccctaaat |
38418733 |
T |
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| Q |
200 |
ccaaaatctcaaagaccaatctaaacataataaaggaggcacatcaaatatcccacaaaggatgtgaaatgagaataattagaacaacacattgt |
294 |
Q |
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| T |
38418734 |
ccaaaatctcaaagaccaatctaaacataataaaggaggcacatcaaatatcccac-aaggatgtgaaatgagaataattagaaaaacacattgt |
38418827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 316 - 352
Target Start/End: Original strand, 38418849 - 38418885
Alignment:
| Q |
316 |
tgaaacctataatgtgattaataaattaaccagtatt |
352 |
Q |
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| T |
38418849 |
tgaaacctataatgtgattaataaattaaccagtatt |
38418885 |
T |
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