View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_high_87 (Length: 353)
Name: NF3918_high_87
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_high_87 |
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Alignment Details
Target: chr1 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 18 - 343
Target Start/End: Original strand, 39360731 - 39361056
Alignment:
| Q |
18 |
gtgatggagttcaatggtggttccaatgagaatgaattcggttattttggtggtgttgtgaatgaacatgaaaaagagaaagagaaagtggtagaacaag |
117 |
Q |
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| T |
39360731 |
gtgatggagttcaatggtggttccaatcagaatgaattcggttattttggtggtgttgtgaatgaacatgaaaaagagaaagagaaagtggtagaacaag |
39360830 |
T |
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| Q |
118 |
aaacacatgttgttgaacaagctgaagctgaattagcaaaaaatgaggtacaagaattgtctgatgaattgttggcatacgaggattacatgaagtttta |
217 |
Q |
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| T |
39360831 |
aaacacatgttgttgaacaagctgaagctgaattagcaaaaaatgaggtacaagaattgtctgatgaattgttggcatacgaggattacatgaagtttta |
39360930 |
T |
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| Q |
218 |
tcagatttactatgatggacaatcagtgatgccacctaataatgttcaggaacatgtggttggagatttatggagctttgattgatggtaacaataactg |
317 |
Q |
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| T |
39360931 |
tcagatttactatgatggacaatcagtgatgccacctaataatgttcaggaacatgtggttggagatttatggagctttgattgatggtaacaataactg |
39361030 |
T |
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| Q |
318 |
tttttcatgcttcggtttcttctgtg |
343 |
Q |
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| T |
39361031 |
tttttcatgcttcggtttcttctgtg |
39361056 |
T |
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