View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3918_high_88 (Length: 351)
Name: NF3918_high_88
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_high_88 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-135; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 17 - 344
Target Start/End: Original strand, 14340443 - 14340770
Alignment:
| Q |
17 |
aattcctgatatcttgagccaattcacccaagcagtgcaggtaataattagcaaccaaagaaattaagccttgttgatgcattattatcaagtttggcaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |
|
|
| T |
14340443 |
aattcctgatatcttgagccaattcacccaagcagtgcaggtgataattagcaaccaaagaaattaagcctcgttgatgcattattatcaagtttggcga |
14340542 |
T |
|
| Q |
117 |
ttggtttgattccagttatattgtagtatgattgaaccaagtggaaccggtattggtttaattgattttcatta-nnnnnnnnnnnnnncaacacttgca |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
14340543 |
ttggtttgattccagttatattgtagtatgattgaaccaagtggaaccggtattggtttaattgattttcattattttttttcctttttcaacacttgca |
14340642 |
T |
|
| Q |
216 |
tgtcatctggttcaatcatgggttgagtcgataaaaccaattgaaccaacagagatataaccggttcaatatccaatccaactattatatagcaatttgg |
315 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
14340643 |
tgtcatctggttcaatcat-ggttgagtcgataaaaacaattgaaccaacggagatataaccggttcaatatccaatccaattattatatagcaacttgg |
14340741 |
T |
|
| Q |
316 |
ttatagaactaatacttgtcattcctatg |
344 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
14340742 |
ttatagaactaatacttgtcattcctatg |
14340770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 17 - 344
Target Start/End: Original strand, 3601569 - 3601890
Alignment:
| Q |
17 |
aattcctgatatcttgagccaattcacccaagcagtgcaggtaataattagcaaccaaagaaattaagccttgttgatgcattattatcaagtttggcaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3601569 |
aattcctgatatcttgagccaattcacccaagcagtgcaggtaataattagcaaccaaagaaattaagccttgttgatgcattattatcaagtttggcaa |
3601668 |
T |
|
| Q |
117 |
ttggtttgattccagttatattgtagtatgattgaaccaagtggaaccggtattggtttaattgattttcattannnnnnnnnnnnnncaacacttgcat |
216 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| | |
|
|
| T |
3601669 |
ttggtttgattccagttacattgtagtatgattgaaccaagttgaaccggtattggtttaattgattttcatta-ttttttcctttttcaacact----t |
3601763 |
T |
|
| Q |
217 |
gtcatctggttcaatcatgggttgagtcgataaaaccaattgaaccaacagagatataaccggttcaatatccaatccaactattatatagcaatttggt |
316 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
3601764 |
gtcatctggttcaatcat-ggttgagtcgataaaaccaattgaaacaacggagatataaccggttcaatatccaatccaatcattatatagcaatttggt |
3601862 |
T |
|
| Q |
317 |
tatagaactaatacttgtcattcctatg |
344 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
3601863 |
tatagaactaatacttgtcattcctatg |
3601890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 17 - 178
Target Start/End: Original strand, 3568571 - 3568732
Alignment:
| Q |
17 |
aattcctgatatcttgagccaattcacccaagcagtgcaggtaataattagcaaccaaagaaattaagccttgttgatgcattattatcaagtttggcaa |
116 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||||||||||||||| | | | ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3568571 |
aattcctgacatcttgagccaattctcccaagcagtgcaggtaattagcaaccaccaaagaaattaagccttgttgatgcattattatcaagtttggcaa |
3568670 |
T |
|
| Q |
117 |
ttggtttgattccagttatattgtagtatgattgaaccaagtggaaccggtattggtttaat |
178 |
Q |
| |
|
||||||||||| | |||| |||| |||||||||| ||||||| |||| |||||||||||| |
|
|
| T |
3568671 |
ttggtttgattacggttacattgcagtatgattgcaccaagttgaacatctattggtttaat |
3568732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 83 - 344
Target Start/End: Original strand, 3590710 - 3590962
Alignment:
| Q |
83 |
agccttgttgatgcattattatcaagtttggcaattggtttgattccagttatattgtagtatgattgaaccaagtggaaccggtattggtttaattgat |
182 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||||||||||||| |||| |||| |||| ||||||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
3590710 |
agccttgttgatacattattattaagtttggcaattggtttgtttcctgttacattgcagtatgattgaactaagttgaaccggtattggtttaattgat |
3590809 |
T |
|
| Q |
183 |
tttcattannnnnnnnnnnnnncaacacttgcatgtcatctggttcaatcatgggttgagtcgataaaaccaattgaaccaacagagatataaccggttc |
282 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||| ||||||| ||||||||||||| ||||||||| |||||||| |
|
|
| T |
3590810 |
tttcatt-tttttttcaatttttaacact----tgtcatctggttcaatcat-ggttgagccgataaaaccaatcgaaccaaca---cccggaccggttc |
3590900 |
T |
|
| Q |
283 |
aatatccaatccaactattatatagcaatttggttatagaactaatacttgtcattcctatg |
344 |
Q |
| |
|
||| |||||||||| |||||||||||| ||||||||||||||||||| ||||||||| |||| |
|
|
| T |
3590901 |
aatctccaatccaattattatatagcattttggttatagaactaatagttgtcattcttatg |
3590962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 3590666 - 3590708
Alignment:
| Q |
19 |
ttcctgatatcttgagccaattcacccaagcagtgcaggtaat |
61 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
3590666 |
ttcctgatatcttgagccaattcttccaagcagtgcaggtaat |
3590708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 271 - 324
Target Start/End: Original strand, 3568817 - 3568870
Alignment:
| Q |
271 |
tataaccggttcaatatccaatccaactattatatagcaatttggttatagaac |
324 |
Q |
| |
|
|||||| ||| |||| |||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
3568817 |
tataacaggtacaatctccaatccaattattatatagcaatttggttttagaac |
3568870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 92
Target Start/End: Original strand, 1408831 - 1408906
Alignment:
| Q |
17 |
aattcctgatatcttgagccaattcacccaagcagtgcaggtaataattagcaaccaaagaaattaagccttgttg |
92 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||| || | |||||||| |||||||||||||| |
|
|
| T |
1408831 |
aattcctgatatcttgagccaattctcccaagcagtgcaggtaatttgtaaccaccaaagatattaagccttgttg |
1408906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 216 - 344
Target Start/End: Original strand, 1409169 - 1409299
Alignment:
| Q |
216 |
tgtcatctggttcaatcatgggttgagtcgataaaaccaattgaaccaaca----gagatataaccggttcaatatccaatccaactattatatagcaat |
311 |
Q |
| |
|
||||||||||||||||| ||| | | | |||||||||||||||||||| | ||| | |||||| |||||| | || ||| |||||||||||||||| |
|
|
| T |
1409169 |
tgtcatctggttcaatcgtggttcaact-gataaaaccaattgaaccaagactcggaggtttaaccg-ttcaatcttcagtccgactattatatagcaat |
1409266 |
T |
|
| Q |
312 |
ttggttatagaactaatacttgtcattcctatg |
344 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||| |
|
|
| T |
1409267 |
ttggttttagaactaatacttgtcattactatg |
1409299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 118 - 165
Target Start/End: Original strand, 1409071 - 1409118
Alignment:
| Q |
118 |
tggtttgattccagttatattgtagtatgattgaaccaagtggaaccg |
165 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||||||| |||||| |
|
|
| T |
1409071 |
tggtttgattccgattatattgcagtatgattgaaccaagttgaaccg |
1409118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University