View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3918_high_89 (Length: 351)

Name: NF3918_high_89
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3918_high_89
NF3918_high_89
[»] chr5 (18 HSPs)
chr5 (1-337)||(38283565-38283898)
chr5 (144-333)||(23253710-23253899)
chr5 (184-279)||(2582370-2582464)
chr5 (150-205)||(23253717-23253772)
chr5 (202-251)||(3440823-3440872)
chr5 (271-327)||(23253838-23253894)
chr5 (267-326)||(32129709-32129768)
chr5 (271-327)||(38283712-38283768)
chr5 (267-327)||(39902338-39902398)
chr5 (267-326)||(4895827-4895886)
chr5 (201-279)||(9465730-9465806)
chr5 (267-334)||(11775708-11775775)
chr5 (267-326)||(13032043-13032102)
chr5 (150-205)||(38283832-38283887)
chr5 (199-265)||(9124952-9125018)
chr5 (145-219)||(32129699-32129773)
chr5 (145-219)||(37266650-37266724)
chr5 (190-279)||(43222100-43222189)
[»] chr8 (8 HSPs)
chr8 (143-326)||(24557359-24557542)
chr8 (136-255)||(1098440-1098557)
chr8 (267-333)||(5033023-5033089)
chr8 (148-230)||(13035078-13035159)
chr8 (157-265)||(21492714-21492823)
chr8 (267-325)||(45113195-45113253)
chr8 (145-219)||(30426751-30426825)
chr8 (150-219)||(28069643-28069712)
[»] chr3 (13 HSPs)
chr3 (144-333)||(20485687-20485876)
chr3 (142-283)||(28229410-28229546)
chr3 (143-231)||(54911781-54911869)
chr3 (143-265)||(32577449-32577570)
chr3 (150-283)||(48950544-48950677)
chr3 (271-327)||(20485692-20485748)
chr3 (185-279)||(33979903-33979997)
chr3 (151-276)||(33338186-33338310)
chr3 (150-205)||(20485814-20485869)
chr3 (267-326)||(40851697-40851756)
chr3 (176-219)||(48084769-48084812)
chr3 (145-219)||(40851692-40851766)
chr3 (183-327)||(31523631-31523776)
[»] chr7 (12 HSPs)
chr7 (157-285)||(21945719-21945844)
chr7 (201-275)||(676038-676112)
chr7 (184-251)||(26826079-26826146)
chr7 (271-321)||(21945796-21945846)
chr7 (185-227)||(27387002-27387044)
chr7 (173-290)||(8149567-8149683)
chr7 (157-262)||(20399993-20400098)
chr7 (185-279)||(1193709-1193803)
chr7 (157-219)||(9559136-9559198)
chr7 (157-251)||(18118540-18118634)
chr7 (151-208)||(34986038-34986095)
chr7 (273-325)||(34986043-34986095)
[»] chr2 (8 HSPs)
chr2 (142-228)||(30824094-30824180)
chr2 (184-283)||(41072957-41073056)
chr2 (176-279)||(373176-373279)
chr2 (267-327)||(28564814-28564874)
chr2 (183-333)||(374960-375111)
chr2 (267-326)||(39465699-39465758)
chr2 (267-333)||(41983431-41983497)
chr2 (216-327)||(23459809-23459921)
[»] chr6 (8 HSPs)
chr6 (267-326)||(4804372-4804431)
chr6 (267-326)||(32737798-32737857)
chr6 (267-333)||(1249238-1249304)
chr6 (145-219)||(4804367-4804441)
chr6 (145-219)||(32737793-32737867)
chr6 (265-306)||(227654-227695)
chr6 (144-249)||(2614472-2614577)
chr6 (216-257)||(17269204-17269245)
[»] chr4 (16 HSPs)
chr4 (184-230)||(38865247-38865291)
chr4 (267-333)||(23610559-23610625)
chr4 (145-219)||(56558198-56558272)
chr4 (173-205)||(31862316-31862348)
chr4 (216-327)||(36688151-36688263)
chr4 (267-327)||(38079812-38079872)
chr4 (185-277)||(54588829-54588921)
chr4 (267-326)||(5763254-5763313)
chr4 (267-326)||(12153095-12153154)
chr4 (176-219)||(26428593-26428636)
chr4 (267-326)||(33247220-33247279)
chr4 (267-326)||(56558203-56558262)
chr4 (145-219)||(12153090-12153164)
chr4 (267-333)||(19902010-19902076)
chr4 (267-335)||(12241500-12241568)
chr4 (267-335)||(52018698-52018766)
[»] chr1 (15 HSPs)
chr1 (176-279)||(24413294-24413397)
chr1 (185-251)||(36700861-36700927)
chr1 (185-251)||(36716965-36717031)
chr1 (267-326)||(12381002-12381061)
chr1 (267-326)||(12385069-12385128)
chr1 (267-326)||(45977946-45978005)
chr1 (193-279)||(1358404-1358489)
chr1 (145-219)||(7841792-7841866)
chr1 (267-333)||(12151684-12151750)
chr1 (145-219)||(12380992-12381066)
chr1 (145-219)||(12385059-12385133)
chr1 (145-219)||(45977941-45978015)
chr1 (267-333)||(50484303-50484369)
chr1 (151-327)||(30077607-30077784)
chr1 (176-208)||(18976395-18976427)
[»] scaffold0012 (1 HSPs)
scaffold0012 (267-326)||(207987-208046)


Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 38283565 - 38283898
Alignment:
Q  1 taatttgaatcatctcacgatttatttgagttttacaagtataatgtcccttgaacctctcatttgagacattatttctttgtttcatctttcttatcaa 100  Q
    ||||||||||||||||| ||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38283565 taatttgaatcatctcatgatttctttgagtcttacaagtatgatgtcccttgaacctctcatttgagacattatttctttgtttcatctttcttatcaa 38283664  T
Q  101 aatcctccgaccatgnnnnnnnnnccctctttcttttgaagtgagttaggatcctttccatttaaatttttgtctatttctaccatttggagagatatag 200  Q
    |||||||| ||||||         || |||||||||| |||||||||| |||||| ||||||||||||||| |||||||||||||||| |||||||||||    
T  38283665 aatcctccaaccatgtttttttttcc-tctttcttttcaagtgagttaagatcctctccatttaaatttttatctatttctaccatttagagagatatag 38283763  T
Q  201 acacaaaaattcttgaaaataattaatgatagttagacttatttaatgatatgactcaccacctactttatgtgtctatatctctccaaagtgtaaaaat 300  Q
    |||||||  ||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  38283764 acacaaa--ttcttaaaaataattaatgatagtcagacttatttaatgatatgacccaccacctactttatgtgtctatatctctccaaattgtaaaaat 38283861  T
Q  301 ggagaaaaatttaaatggagaggatctcaaccctttt 337  Q
    ||||||||||||||||| |||||||||||||||||||    
T  38283862 ggagaaaaatttaaatgaagaggatctcaaccctttt 38283898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 144 - 333
Target Start/End: Complemental strand, 23253899 - 23253710
Alignment:
Q  144 agttaggatcctttccatttaaatttttgtctatttctaccatttggagagatatagacacaaaaattcttgaaaataattaatgatagttagacttatt 243  Q
    ||||| |||||| ||||||||||||||  ||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||| | || ||||    
T  23253899 agttaagatcctctccatttaaattttcctctatttttaccatttggatagatatagacacaaaagttcttgaaaataattaatgatagtgaaacctatt 23253800  T
Q  244 taatgatatgactcaccacctactttatgtgtctatatctctccaaagtgtaaaaatggagaaaaatttaaatggagaggatctcaaccc 333  Q
    |||||| ||||| ||||||| | ||||||||||| ||||||||||||  ||| ||||||||||||||||||||||| |||||||||||||    
T  23253799 taatgacatgacccaccacccattttatgtgtctctatctctccaaatggtagaaatggagaaaaatttaaatggataggatctcaaccc 23253710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 184 - 279
Target Start/End: Complemental strand, 2582464 - 2582370
Alignment:
Q  184 catttggagagatatagacacaaaaattcttgaaaataattaatgatagttagacttatttaatgatatgactcaccacctactttatgtgtctat 279  Q
    ||||||| |||||||||||||||||| |||| |||||||||||||||  | ||| ||||||||||||| ||| ||||||||| ||| |||||||||    
T  2582464 catttggggagatatagacacaaaaaatcttaaaaataattaatgatgatgagatttatttaatgataggacccaccaccta-tttttgtgtctat 2582370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 150 - 205
Target Start/End: Original strand, 23253717 - 23253772
Alignment:
Q  150 gatcctttccatttaaatttttgtctatttctaccatttggagagatatagacaca 205  Q
    |||||| ||||||||||||||| || |||||||||||||||||||||| |||||||    
T  23253717 gatcctatccatttaaatttttctccatttctaccatttggagagatagagacaca 23253772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 251
Target Start/End: Original strand, 3440823 - 3440872
Alignment:
Q  202 cacaaaaattcttgaaaataattaatgatagttagacttatttaatgata 251  Q
    |||||||| ||||||||||||||||||||| | |||||||||||||||||    
T  3440823 cacaaaaaatcttgaaaataattaatgataatgagacttatttaatgata 3440872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 271 - 327
Target Start/End: Original strand, 23253838 - 23253894
Alignment:
Q  271 tgtgtctatatctctccaaagtgtaaaaatggagaaaaatttaaatggagaggatct 327  Q
    ||||||||||||| ||||||  |||||||| ||| ||||||||||||||||||||||    
T  23253838 tgtgtctatatctatccaaatggtaaaaatagaggaaaatttaaatggagaggatct 23253894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 267 - 326
Target Start/End: Original strand, 32129709 - 32129768
Alignment:
Q  267 tttatgtgtctatatctctccaaagtgtaaaaatggagaaaaatttaaatggagaggatc 326  Q
    ||||||||||| |||||||||||| || | ||||||||||| || |||||||||||||||    
T  32129709 tttatgtgtctttatctctccaaattgaagaaatggagaaacatataaatggagaggatc 32129768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 327
Target Start/End: Complemental strand, 38283768 - 38283712
Alignment:
Q  271 tgtgtctatatctctccaaagtgtaaaaatggagaaaaatttaaatggagaggatct 327  Q
    |||||||||||||||| |||  ||| |||| || |||||||||||||||||||||||    
T  38283768 tgtgtctatatctctctaaatggtagaaatagataaaaatttaaatggagaggatct 38283712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 327
Target Start/End: Complemental strand, 39902398 - 39902338
Alignment:
Q  267 tttatgtgtctatatctctccaaagtgtaaaaatggagaaaaatttaaatggagaggatct 327  Q
    ||||||||||| |||||||||||| || | ||||||||||| |  ||||||||||||||||    
T  39902398 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggatct 39902338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 267 - 326
Target Start/End: Original strand, 4895827 - 4895886
Alignment:
Q  267 tttatgtgtctatatctctccaaagtgtaaaaatggagaaaaatttaaatggagaggatc 326  Q
    ||||||||||| |||||||||||| || | ||||||||||| || |||||| ||||||||    
T  4895827 tttatgtgtctttatctctccaaattgaagaaatggagaaacatataaatgaagaggatc 4895886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 201 - 279
Target Start/End: Original strand, 9465730 - 9465806
Alignment:
Q  201 acacaaaaattcttgaaaataattaatgatagttagacttatttaatgatatgactcaccacctactttatgtgtctat 279  Q
    |||||||||||  ||||||||||||||||| || | | | ||||||||||| ||  ||||||||| |||||||||||||    
T  9465730 acacaaaaatt--tgaaaataattaatgatggtgaaattcatttaatgataggatccaccacctattttatgtgtctat 9465806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 267 - 334
Target Start/End: Complemental strand, 11775775 - 11775708
Alignment:
Q  267 tttatgtgtctatatctctccaaagtgtaaaaatggagaaaaatttaaatggagaggatctcaaccct 334  Q
    ||||||||| | |||||||||||| || | ||||||||||| |  |||||||||||||||| ||||||    
T  11775775 tttatgtgtttttatctctccaaattgaagaaatggagaaacacataaatggagaggatcttaaccct 11775708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 267 - 326
Target Start/End: Complemental strand, 13032102 - 13032043
Alignment:
Q  267 tttatgtgtctatatctctccaaagtgtaaaaatggagaaaaatttaaatggagaggatc 326  Q
    ||||||||||| |||||||||||| || | ||||||||||| |  |||||||||||||||    
T  13032102 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggatc 13032043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 150 - 205
Target Start/End: Complemental strand, 38283887 - 38283832
Alignment:
Q  150 gatcctttccatttaaatttttgtctatttctaccatttggagagatatagacaca 205  Q
    |||||| | ||||||||||||| || |||| ||| |||||||||||||||||||||    
T  38283887 gatcctcttcatttaaatttttctccatttttacaatttggagagatatagacaca 38283832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 265
Target Start/End: Complemental strand, 9125018 - 9124952
Alignment:
Q  199 agacacaaaaattcttgaaaataattaatgatagttagacttatttaatgatatgactcaccaccta 265  Q
    ||||||||||  | |||||||||||||||||| || ||||||||||||| ||| ||  |||||||||    
T  9125018 agacacaaaatatattgaaaataattaatgattgtgagacttatttaattataggatccaccaccta 9124952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 219
Target Start/End: Complemental strand, 32129773 - 32129699
Alignment:
Q  145 gttaggatcctttccatttaaatttttgtctatttctaccatttggagagatatagacacaaaaattcttgaaaa 219  Q
    ||||||||||| |||||||| || ||| || |||||| | ||||||||||||| ||||||| ||| | |||||||    
T  32129773 gttaggatcctctccatttatatgtttctccatttcttcaatttggagagataaagacacataaaattttgaaaa 32129699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 219
Target Start/End: Original strand, 37266650 - 37266724
Alignment:
Q  145 gttaggatcctttccatttaaatttttgtctatttctaccatttggagagatatagacacaaaaattcttgaaaa 219  Q
    ||||||||||| ||||||||  | ||| || |||||| | ||||||||||||| ||||||| ||| |||||||||    
T  37266650 gttaggatcctctccatttacgtgtttttccatttcttcaatttggagagataaagacacataaaatcttgaaaa 37266724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 279
Target Start/End: Original strand, 43222100 - 43222189
Alignment:
Q  190 gagagatatagacacaaaaattcttgaaaataattaatgatagttagacttatttaatgatatgactcaccacctactttatgtgtctat 279  Q
    |||||||| ||||||| ||| | |||||||||||||||||| ||  ||   ||||||||||| ||| ||||| ||| ||| |||||||||    
T  43222100 gagagataaagacacataaaattttgaaaataattaatgatggtgggatccatttaatgataagacccaccatctattttttgtgtctat 43222189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 112; Significance: 1e-56; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 143 - 326
Target Start/End: Original strand, 24557359 - 24557542
Alignment:
Q  143 gagttaggatcctttccatttaaatttttgtctatttctaccatttggagagatatagacacaaaaattcttgaaaataattaatgatagttagacttat 242  Q
    |||||| |||||| |||||||||||||||| | ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||| |||    
T  24557359 gagttaagatcctctccatttaaatttttgccaatttctaccatttagagatatatagacacaaaaattcttgaaaataattaatgatagtcagacgtat 24557458  T
Q  243 ttaatgatatgactcaccacctactttatgtgtctatatctctccaaagtgtaaaaatggagaaaaatttaaatggagaggatc 326  Q
    ||||||||||||| || |||||| |||||||| |||||| ||| |||| |||||||||| | |||||||||||| |||||||||    
T  24557459 ttaatgatatgacccatcacctattttatgtgcctatatatcttcaaattgtaaaaatgaataaaaatttaaatagagaggatc 24557542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 136 - 255
Target Start/End: Complemental strand, 1098557 - 1098440
Alignment:
Q  136 ttgaagtgagttaggatcctttccatttaaatttttgtctatttctaccatttggagagatatagacacaaaaattcttgaaaataattaatgatagtta 235  Q
    |||||| |||||| |||| | ||||||||| ||||| || |||||||||||||  | | ||||||||||||||| |||||||||||||||||| |||| |    
T  1098557 ttgaagcgagttaagatcatctccatttaatttttt-tc-atttctaccatttcaaaaaatatagacacaaaaaatcttgaaaataattaatgctagtaa 1098460  T
Q  236 gacttatttaatgatatgac 255  Q
    ||| |||||||| |||||||    
T  1098459 gacctatttaataatatgac 1098440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 267 - 333
Target Start/End: Complemental strand, 5033089 - 5033023
Alignment:
Q  267 tttatgtgtctatatctctccaaagtgtaaaaatggagaaaaatttaaatggagaggatctcaaccc 333  Q
    ||||||||||| |||||||||||| || | ||||||||||| || |||||||||||||||| |||||    
T  5033089 tttatgtgtctttatctctccaaattgaagaaatggagaaacatataaatggagaggatcttaaccc 5033023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 148 - 230
Target Start/End: Original strand, 13035078 - 13035159
Alignment:
Q  148 aggatcctttccatttaaatttttgtctatttctaccatttggagagatatagacacaaaaattcttgaaaataattaatgat 230  Q
    ||||||||||||||||||| | || || |||||| | |||| || ||||| ||||||||||| ||||||||||||||||||||    
T  13035078 aggatcctttccatttaaactattttccatttcttctatttagaaagataaagacacaaaaa-tcttgaaaataattaatgat 13035159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 157 - 265
Target Start/End: Original strand, 21492714 - 21492823
Alignment:
Q  157 tccatttaaatttttgtctatttctaccatttggagagatatagacaca-aaaattcttgaaaataattaatgatagttagacttatttaatgatatgac 255  Q
    |||||||||| | || || |||||| ||||||||||||||| ||||||| |||| |||||||||||| ||||||| ||  ||| |||||||| |||  |     
T  21492714 tccatttaaactcttttccatttcttccatttggagagataaagacacacaaaaatcttgaaaataagtaatgatggtgggacctatttaataatagtat 21492813  T
Q  256 tcaccaccta 265  Q
    ||||||||||    
T  21492814 tcaccaccta 21492823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 267 - 325
Target Start/End: Complemental strand, 45113253 - 45113195
Alignment:
Q  267 tttatgtgtctatatctctccaaagtgtaaaaatggagaaaaatttaaatggagaggat 325  Q
    ||||||||||||||||||||||||  ||||||||| ||||  || ||||||||||||||    
T  45113253 tttatgtgtctatatctctccaaatggtaaaaatgaagaaggatataaatggagaggat 45113195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 219
Target Start/End: Complemental strand, 30426825 - 30426751
Alignment:
Q  145 gttaggatcctttccatttaaatttttgtctatttctaccatttggagagatatagacacaaaaattcttgaaaa 219  Q
    ||||||||||| ||||||||  | ||| || |||||| | ||||||||||||| ||||||| ||| |||||||||    
T  30426825 gttaggatcctctccatttatgtgtttttccatttcttcaatttggagagataaagacacataaaatcttgaaaa 30426751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 219
Target Start/End: Original strand, 28069643 - 28069712
Alignment:
Q  150 gatcctttccatttaaatttttgtctatttctaccatttggagagatatagacacaaaaattcttgaaaa 219  Q
    |||||| ||||||||  | ||| || |||||| ||||||||||||||| ||||||| ||| |||||||||    
T  28069643 gatcctctccatttatgtgtttttcaatttcttccatttggagagataaagacacataaaatcttgaaaa 28069712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 110; Significance: 2e-55; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 144 - 333
Target Start/End: Original strand, 20485687 - 20485876
Alignment:
Q  144 agttaggatcctttccatttaaatttttgtctatttctaccatttggagagatatagacacaaaaattcttgaaaataattaatgatagttagacttatt 243  Q
    ||||| |||||| ||||||||||||||  || |||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||| | || ||||    
T  20485687 agttaagatcctctccatttaaattttcctccatttttaccatttggagagatatagacacaaaagttctagaaaataattaatgatagtgaaacctatt 20485786  T
Q  244 taatgatatgactcaccacctactttatgtgtctatatctctccaaagtgtaaaaatggagaaaaatttaaatggagaggatctcaaccc 333  Q
    |||||| | ||| ||||||| | ||||||||| ||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||    
T  20485787 taatgacacgacccaccacccattttatgtgtttatatctctccaaatggtagaaatggagaaaaatttaaatggagaggatctcaaccc 20485876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 142 - 283
Target Start/End: Complemental strand, 28229546 - 28229410
Alignment:
Q  142 tgagttaggatcctttccatttaaatttttgtctatttctaccatttggagagatatagacacaaaaattcttgaaaataattaatgatagttagactta 241  Q
    ||||||| |||||| |||||||||  | ||||| |||||| |||||| ||||||||||||||||||||      |||| |||||||||| || ||||| |    
T  28229546 tgagttaagatcctctccatttaatctcttgtccatttcttccatttagagagatatagacacaaaaaa-----aaaaaaattaatgatggtgagactca 28229452  T
Q  242 tttaatgatatgactcaccacctactttatgtgtctatatct 283  Q
    |||||||||| ||||||||||||| ||| |||||||||||||    
T  28229451 tttaatgataggactcaccacctattttttgtgtctatatct 28229410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 143 - 231
Target Start/End: Original strand, 54911781 - 54911869
Alignment:
Q  143 gagttaggatcctttccatttaaatttttgtctatttctaccatttggagagatatagacacaaaaattcttgaaaataattaatgata 231  Q
    |||||| ||| || ||||||| |||||||||| |||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||    
T  54911781 gagttaagattctctccattttaatttttgtccatttctaccatttgaagatatataaacacaaaaattcttgaaaataattaatgata 54911869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 143 - 265
Target Start/End: Original strand, 32577449 - 32577570
Alignment:
Q  143 gagttaggatcctttccatttaaatttttgtctatttctaccatttggagagatatagacacaaaaattcttgaaaataattaatgatagttagacttat 242  Q
    |||||||||||||||||||||||| | || || |||||| | ||||||||||||| ||||||||||| ||||||||| |||||||||| ||   ||| ||    
T  32577449 gagttaggatcctttccatttaaactcttctccatttcttctatttggagagataaagacacaaaaa-tcttgaaaaaaattaatgatggtggaactcat 32577547  T
Q  243 ttaatgatatgactcaccaccta 265  Q
    ||||||||| ||| |||||||||    
T  32577548 ttaatgataggacccaccaccta 32577570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 150 - 283
Target Start/End: Original strand, 48950544 - 48950677
Alignment:
Q  150 gatcctttccatttaaatttttgtctatttctaccatttggagagatatagacacaaaaattcttgaaaataattaatgatagttagacttatttaatga 249  Q
    |||||| |||||||||| | || ||||||||  ||||||  | ||||| | | ||||||| |||||||||||||||||||| || ||||| |||||||||    
T  48950544 gatcctctccatttaaactcttctctatttcatccatttacaaagataaaaatacaaaaaatcttgaaaataattaatgatggtgagactcatttaatga 48950643  T
Q  250 tatgactcaccacctactttatgtgtctatatct 283  Q
    || ||  ||||||||| ||||||||||| |||||    
T  48950644 taggatccaccacctattttatgtgtctttatct 48950677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 271 - 327
Target Start/End: Complemental strand, 20485748 - 20485692
Alignment:
Q  271 tgtgtctatatctctccaaagtgtaaaaatggagaaaaatttaaatggagaggatct 327  Q
    ||||||||||||||||||||  |||||||||||| ||||||||||||||||||||||    
T  20485748 tgtgtctatatctctccaaatggtaaaaatggaggaaaatttaaatggagaggatct 20485692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 185 - 279
Target Start/End: Original strand, 33979903 - 33979997
Alignment:
Q  185 atttggagagatatagacacaaaaattcttgaaaataattaatgatagttagacttatttaatgatatgactcaccacctactttatgtgtctat 279  Q
    |||| |||||||||| | |||| || |||| |||||||||||||||||| ||||||||||||||||| || ||||||  || ||| |||||||||    
T  33979903 atttagagagatatatatacaataaatcttaaaaataattaatgatagtgagacttatttaatgataggattcaccatttattttttgtgtctat 33979997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 151 - 276
Target Start/End: Complemental strand, 33338310 - 33338186
Alignment:
Q  151 atcctttccatttaaatttttgtctatttctaccatttggagagatatagacacaaaaattcttgaaaataattaatgatagttagacttatttaatgat 250  Q
    ||||| |||||||||| | || || |||||| || |||| ||||||| |||||||||||| |||||||||| ||||||||  | ||||| ||||||||||    
T  33338310 atcctctccatttaaactcttttccatttcttccgtttgaagagataaagacacaaaaat-cttgaaaatagttaatgatgatgagactcatttaatgat 33338212  T
Q  251 atgactcaccacctactttatgtgtc 276  Q
    | ||| |||| |||| ||| ||||||    
T  33338211 aggacccacctcctattttgtgtgtc 33338186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 150 - 205
Target Start/End: Complemental strand, 20485869 - 20485814
Alignment:
Q  150 gatcctttccatttaaatttttgtctatttctaccatttggagagatatagacaca 205  Q
    |||||| ||||||||||||||| || |||||||||||||||||||||||| |||||    
T  20485869 gatcctctccatttaaatttttctccatttctaccatttggagagatataaacaca 20485814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 267 - 326
Target Start/End: Complemental strand, 40851756 - 40851697
Alignment:
Q  267 tttatgtgtctatatctctccaaagtgtaaaaatggagaaaaatttaaatggagaggatc 326  Q
    ||||||||||| |||||||||||| || | ||||||||||| |  |||||||||||||||    
T  40851756 tttatgtgtctttatctctccaaattgaagaaatggagaaatacataaatggagaggatc 40851697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 176 - 219
Target Start/End: Original strand, 48084769 - 48084812
Alignment:
Q  176 atttctaccatttggagagatatagacacaaaaattcttgaaaa 219  Q
    |||||||||||||||||||||||||||||| ||| | |||||||    
T  48084769 atttctaccatttggagagatatagacacacaaaattttgaaaa 48084812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 219
Target Start/End: Original strand, 40851692 - 40851766
Alignment:
Q  145 gttaggatcctttccatttaaatttttgtctatttctaccatttggagagatatagacacaaaaattcttgaaaa 219  Q
    ||||||||||| ||||||||  | ||| || |||||| | ||||||||||||| ||||||| ||| |||||||||    
T  40851692 gttaggatcctctccatttatgtatttctccatttcttcaatttggagagataaagacacataaaatcttgaaaa 40851766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 327
Target Start/End: Complemental strand, 31523776 - 31523631
Alignment:
Q  183 ccatttggagagatatagacacaaaaattcttgaaaataattaatgatagttagacttatttaatgatatgactcaccacctactttatgtgtctatatc 282  Q
    |||||| |||||||| ||||||| |||   |  ||||||||||||||| ||  |||  | ||| | ||| ||| |||||| || ||| ||||||||| ||    
T  31523776 ccatttagagagataaagacacataaaaagtaaaaaataattaatgatggtgggacccacttagtaataggacccaccacttattttttgtgtctatctc 31523677  T
Q  283 tctccaaagtgtaa-aaatggagaaaaatttaaatggagaggatct 327  Q
    |||||||| || || |||||||||||  | ||||||||||||||||    
T  31523676 tctccaaattgcaataaatggagaaatttataaatggagaggatct 31523631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 157 - 285
Target Start/End: Complemental strand, 21945844 - 21945719
Alignment:
Q  157 tccatttaaatttttgtctatttctaccatttggagagatatagacacaaaaattcttgaaaataattaatgatagttagacttatttaatgatatgact 256  Q
    ||||||||||||||| |  |||||||| |||||||||||||||||||||||||||||||||    |||||||||||| |||  ||||||||||||||||     
T  21945844 tccatttaaatttttcttcatttctactatttggagagatatagacacaaaaattcttgaa---tattaatgatagtcagatctatttaatgatatgacc 21945748  T
Q  257 caccacctactttatgtgtctatatctct 285  Q
    ||||||||| |||||||||||||||||||    
T  21945747 caccacctattttatgtgtctatatctct 21945719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 201 - 275
Target Start/End: Complemental strand, 676112 - 676038
Alignment:
Q  201 acacaaaaattcttgaaaataattaatgatagttagacttatttaatgatatgactcaccacctactttatgtgt 275  Q
    ||||||||| |||||||||||||||||||| || ||||| ||||||||||| || ||||||| || ||| |||||    
T  676112 acacaaaaaatcttgaaaataattaatgatggtgagactcatttaatgataggaatcaccacatattttttgtgt 676038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 251
Target Start/End: Complemental strand, 26826146 - 26826079
Alignment:
Q  184 catttggagagatatagacacaaaaattcttgaaaataattaatgatagttagacttatttaatgata 251  Q
    |||||||||||||| ||| |||||| || || ||||||||||||||| |||| ||| |||||||||||    
T  26826146 catttggagagataaagatacaaaagttattaaaaataattaatgatggttaaactcatttaatgata 26826079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 271 - 321
Target Start/End: Original strand, 21945796 - 21945846
Alignment:
Q  271 tgtgtctatatctctccaaagtgtaaaaatggagaaaaatttaaatggaga 321  Q
    ||||||||||||||||||||  ||| ||||| |||||||||||||||||||    
T  21945796 tgtgtctatatctctccaaatagtagaaatgaagaaaaatttaaatggaga 21945846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 227
Target Start/End: Complemental strand, 27387044 - 27387002
Alignment:
Q  185 atttggagagatatagacacaaaaattcttgaaaataattaat 227  Q
    ||||||| ||||||||||||||||| |||||||||||||||||    
T  27387044 atttggaaagatatagacacaaaaaatcttgaaaataattaat 27387002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 173 - 290
Target Start/End: Original strand, 8149567 - 8149683
Alignment:
Q  173 tctatttctaccatttggagagatatagacacaaaaattcttgaaaataattaatgatagttagacttatttaatgatatgactcaccacctactttatg 272  Q
    ||||||||||||||||||||||||| |||||||||||   |  ||||||||||||||| ||  |||  | ||||||||||||| ||| || || |||| |    
T  8149567 tctatttctaccatttggagagataaagacacaaaaa-ggtaaaaaataattaatgatggtgggacccacttaatgatatgacccactacttattttacg 8149665  T
Q  273 tgtctatatctctccaaa 290  Q
    | ||||| ||||| ||||    
T  8149666 tctctatctctcttcaaa 8149683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 157 - 262
Target Start/End: Original strand, 20399993 - 20400098
Alignment:
Q  157 tccatttaaatttttgtctatttctaccatttggagagatatagacacaaaaattcttgaaaataattaatgatagttagacttatttaatgatatgact 256  Q
    |||||||||||| || || |||||| | ||||  | ||||| ||||| ||||| |||| ||||||||||||||| ||  |||| ||||||||||| |||     
T  20399993 tccatttaaattattttccatttcttctatttaaacagataaagacataaaaaatcttaaaaataattaatgatcgtgtgactcatttaatgataagacc 20400092  T
Q  257 caccac 262  Q
    ||||||    
T  20400093 caccac 20400098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 279
Target Start/End: Complemental strand, 1193803 - 1193709
Alignment:
Q  185 atttggagagatatagacacaaaaattcttgaaaataattaatgatagttagacttatttaatgatatgactcaccacctactttatgtgtctat 279  Q
    |||| |||||||| |||||||| ||   || ||||||||||||  | |||||||| ||||||||| ||||  ||||||||| ||| |||||||||    
T  1193803 atttagagagataaagacacaataaaaatttaaaataattaatcgtggttagactcatttaatgacatgagccaccacctattttttgtgtctat 1193709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 219
Target Start/End: Complemental strand, 9559198 - 9559136
Alignment:
Q  157 tccatttaaatttttgtctatttctaccatttggagagatatagacacaaaaattcttgaaaa 219  Q
    |||||||| || ||| || |||||| ||||||||||||||| ||||||| ||| |||||||||    
T  9559198 tccatttatatgtttctcgatttcttccatttggagagataaagacacataaaatcttgaaaa 9559136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 251
Target Start/End: Complemental strand, 18118634 - 18118540
Alignment:
Q  157 tccatttaaatttttgtctatttctaccatttggagagatatagacacaaaaattcttgaaaataattaatgatagttagacttatttaatgata 251  Q
    |||||||||||| || || |||||| | ||||  | ||||| ||| | ||||| |||||||||||||||||||| ||  |||| |||||||||||    
T  18118634 tccatttaaattattctccatttcttctatttaaatagataaagatataaaaaatcttgaaaataattaatgatggtgtgactcatttaatgata 18118540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 208
Target Start/End: Complemental strand, 34986095 - 34986038
Alignment:
Q  151 atcctttccatttaaatttttgtctatttctaccatttggagagatatagacacaaaa 208  Q
    ||||| ||||||||  | ||| || |||||||||||||||||||||||||||| ||||    
T  34986095 atcctctccatttatgtctttctccatttctaccatttggagagatatagacataaaa 34986038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 325
Target Start/End: Original strand, 34986043 - 34986095
Alignment:
Q  273 tgtctatatctctccaaagtgtaaaaatggagaaaaatttaaatggagaggat 325  Q
    ||||||||||||||||||  ||| ||||||||||| |  ||||||||||||||    
T  34986043 tgtctatatctctccaaatggtagaaatggagaaagacataaatggagaggat 34986095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 9e-18; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 142 - 228
Target Start/End: Original strand, 30824094 - 30824180
Alignment:
Q  142 tgagttaggatcctttccatttaaatttttgtctatttctaccatttggagagatatagacacaaaaattcttgaaaataattaatg 228  Q
    ||||||| ||||||||||||||||  | || || |||||| |||||| |||||||||||||||||||| |||| |||||||||||||    
T  30824094 tgagttaagatcctttccatttaatctcttctccatttcttccatttagagagatatagacacaaaaaatcttaaaaataattaatg 30824180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 184 - 283
Target Start/End: Complemental strand, 41073056 - 41072957
Alignment:
Q  184 catttggagagatatagacacaaaaattcttgaaaataattaatgatagttagacttatttaatgatatgactcaccacctactttatgtgtctatatct 283  Q
    ||||| |||||||| ||||||||||| |||| ||||||||||||||| || |||   ||||||||||| ||| ||||| ||| ||||| |||||||||||    
T  41073056 catttagagagataaagacacaaaaaatcttaaaaataattaatgattgtgagatccatttaatgataggacccaccaactattttatatgtctatatct 41072957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 176 - 279
Target Start/End: Complemental strand, 373279 - 373176
Alignment:
Q  176 atttctaccatttggagagatatagacacaaaaattcttgaaaataattaatgatagttagacttatttaatgatatgactcaccacctactttatgtgt 275  Q
    |||||| |||||| || ||||| ||| ||||||| |||| |||||||||||| || ||  || | ||||||| ||||||| ||||||||| ||| |||||    
T  373279 atttcttccatttagaaagataaagatacaaaaaatcttaaaaataattaataatggtgggattcatttaataatatgacccaccacctattttttgtgt 373180  T
Q  276 ctat 279  Q
    ||||    
T  373179 ctat 373176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 327
Target Start/End: Complemental strand, 28564874 - 28564814
Alignment:
Q  267 tttatgtgtctatatctctccaaagtgtaaaaatggagaaaaatttaaatggagaggatct 327  Q
    ||||||||||| |||||||||||| || | ||||||||||| |  ||||||||||||||||    
T  28564874 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggatct 28564814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 183 - 333
Target Start/End: Original strand, 374960 - 375111
Alignment:
Q  183 ccatttggagagatatagacacaaaaattcttgaaaataattaatgatagttagacttatttaatgatatgactcaccacctactttatgtgtctatatc 282  Q
    |||||| |||||||| ||||||| |||   |  ||||||||||||||| ||  |||  | ||| | ||| ||| |||||| || ||| ||||||||| ||    
T  374960 ccatttagagagataaagacacataaaaagtaaaaaataattaatgatggtgggacccacttagtaataggacccaccacttattttttgtgtctatctc 375059  T
Q  283 tctccaaagtgtaa-aaatggagaaaaatttaaatggagaggatctcaaccc 333  Q
    |||||||| || || |||||||||||  | |||||||||||||||| |||||    
T  375060 tctccaaattgcaacaaatggagaaatttataaatggagaggatcttaaccc 375111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 267 - 326
Target Start/End: Complemental strand, 39465758 - 39465699
Alignment:
Q  267 tttatgtgtctatatctctccaaagtgtaaaaatggagaaaaatttaaatggagaggatc 326  Q
    ||||||||| | |||||||||||| || ||||||||||||| |  |||||||||||||||    
T  39465758 tttatgtgtttttatctctccaaattgaaaaaatggagaaacacataaatggagaggatc 39465699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 267 - 333
Target Start/End: Original strand, 41983431 - 41983497
Alignment:
Q  267 tttatgtgtctatatctctccaaagtgtaaaaatggagaaaaatttaaatggagaggatctcaaccc 333  Q
    ||||||||||| |||||||||||| |  | ||||||||||| |  |||||||||||||||| |||||    
T  41983431 tttatgtgtctttatctctccaaattaaagaaatggagaaacacataaatggagaggatcttaaccc 41983497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 327
Target Start/End: Complemental strand, 23459921 - 23459809
Alignment:
Q  216 aaaataattaatgatagttagacttatttaatgatatgactcaccacctactttatgtgtctatatctctccaaagtgtaa-aaatggagaaaaatttaa 314  Q
    ||||||||||||||| ||  |||  ||||| ||||| ||| | |||| || ||| ||||||||| |||||||||| || || ||||||| |||  | |||    
T  23459921 aaaataattaatgatggtgggacccatttagtgataggacccgccacttattttttgtgtctatctctctccaaattgcaacaaatggaaaaatttataa 23459822  T
Q  315 atggagaggatct 327  Q
    |||||||||||||    
T  23459821 atggagaggatct 23459809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 267 - 326
Target Start/End: Complemental strand, 4804431 - 4804372
Alignment:
Q  267 tttatgtgtctatatctctccaaagtgtaaaaatggagaaaaatttaaatggagaggatc 326  Q
    ||||||||||| |||||||||||| || | ||||||||||| || |||||||||||||||    
T  4804431 tttatgtgtctttatctctccaaattgaagaaatggagaaacatataaatggagaggatc 4804372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 267 - 326
Target Start/End: Complemental strand, 32737857 - 32737798
Alignment:
Q  267 tttatgtgtctatatctctccaaagtgtaaaaatggagaaaaatttaaatggagaggatc 326  Q
    ||||||||||| |||||||||||| || | ||||||||||| || |||||||||||||||    
T  32737857 tttatgtgtctttatctctccaaattgaagaaatggagaaacatataaatggagaggatc 32737798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 267 - 333
Target Start/End: Original strand, 1249238 - 1249304
Alignment:
Q  267 tttatgtgtctatatctctccaaagtgtaaaaatggagaaaaatttaaatggagaggatctcaaccc 333  Q
    ||||||||||| ||||| |||||| || | ||||||||||| |  |||||||||||||||| |||||    
T  1249238 tttatgtgtctttatctttccaaattgaagaaatggagaaacacataaatggagaggatcttaaccc 1249304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 219
Target Start/End: Original strand, 4804367 - 4804441
Alignment:
Q  145 gttaggatcctttccatttaaatttttgtctatttctaccatttggagagatatagacacaaaaattcttgaaaa 219  Q
    ||||||||||| |||||||| || ||| || |||||| | ||||||||||||| ||||||| ||| | |||||||    
T  4804367 gttaggatcctctccatttatatgtttctccatttcttcaatttggagagataaagacacataaaattttgaaaa 4804441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 219
Target Start/End: Original strand, 32737793 - 32737867
Alignment:
Q  145 gttaggatcctttccatttaaatttttgtctatttctaccatttggagagatatagacacaaaaattcttgaaaa 219  Q
    ||||||||||| |||||||| || ||| || |||||| | ||||||||||||| ||||||| ||| | |||||||    
T  32737793 gttaggatcctctccatttatatgtttctccatttcttcaatttggagagataaagacacataaaattttgaaaa 32737867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 306
Target Start/End: Original strand, 227654 - 227695
Alignment:
Q  265 actttatgtgtctatatctctccaaagtgtaaaaatggagaa 306  Q
    ||||| |||||||||||||||||||| |||| ||||||||||    
T  227654 actttgtgtgtctatatctctccaaattgtagaaatggagaa 227695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 249
Target Start/End: Complemental strand, 2614577 - 2614472
Alignment:
Q  144 agttaggatcctttccatttaaatttttgtctatttctaccatttggagagatatagacacaaaaattcttgaaaataattaatgatagttagacttatt 243  Q
    ||||| |||||| | |||||||||| || || ||||||||  |||||| | ||| | || |||||| |||| ||||||||||||||| ||  |||| |||    
T  2614577 agttaagatcctcttcatttaaattcttttccatttctactgtttggaaaaataaaaacgcaaaaaatcttaaaaataattaatgatggtgtgactcatt 2614478  T
Q  244 taatga 249  Q
    ||||||    
T  2614477 taatga 2614472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 257
Target Start/End: Complemental strand, 17269245 - 17269204
Alignment:
Q  216 aaaataattaatgatagttagacttatttaatgatatgactc 257  Q
    |||||||||||||||||| ||||| ||||||||| |||||||    
T  17269245 aaaataattaatgatagtgagactcatttaatgacatgactc 17269204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 230
Target Start/End: Original strand, 38865247 - 38865291
Alignment:
Q  184 catttggagagatatagacacaaaaattcttgaaaataattaatgat 230  Q
    |||||||||||||||||||||||||  ||||||||||||||||||||    
T  38865247 catttggagagatatagacacaaaa--tcttgaaaataattaatgat 38865291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 267 - 333
Target Start/End: Complemental strand, 23610625 - 23610559
Alignment:
Q  267 tttatgtgtctatatctctccaaagtgtaaaaatggagaaaaatttaaatggagaggatctcaaccc 333  Q
    ||||||| ||| |||||||||||| || | ||||||||||| || |||||||||||||||| |||||    
T  23610625 tttatgtatctttatctctccaaattgaagaaatggagaaacatataaatggagaggatcttaaccc 23610559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 219
Target Start/End: Original strand, 56558198 - 56558272
Alignment:
Q  145 gttaggatcctttccatttaaatttttgtctatttctaccatttggagagatatagacacaaaaattcttgaaaa 219  Q
    ||||||||||| |||||||| || ||| ||||||||| | ||||||||||||| ||||||| ||| | |||||||    
T  56558198 gttaggatcctctccatttatatgtttctctatttcttcaatttggagagataaagacacataaaattttgaaaa 56558272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 205
Target Start/End: Complemental strand, 31862348 - 31862316
Alignment:
Q  173 tctatttctaccatttggagagatatagacaca 205  Q
    |||||||||||||||||||||||||||||||||    
T  31862348 tctatttctaccatttggagagatatagacaca 31862316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 327
Target Start/End: Complemental strand, 36688263 - 36688151
Alignment:
Q  216 aaaataattaatgatagttagacttatttaatgatatgactcaccacctactttatgtgtctatatctctccaaagtgtaa-aaatggagaaaaatttaa 314  Q
    ||||||||||||||| ||  |||  | ||| ||||| |||||| ||| || ||| ||||||||| |||||||||| || || |||||||||||  | |||    
T  36688263 aaaataattaatgatggtgggacccacttagtgataggactcaacacttattttttgtgtctatctctctccaaattgcaacaaatggagaaatttataa 36688164  T
Q  315 atggagaggatct 327  Q
    |||||||||||||    
T  36688163 atggagaggatct 36688151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 327
Target Start/End: Original strand, 38079812 - 38079872
Alignment:
Q  267 tttatgtgtctatatctctccaaagtgtaaaaatggagaaaaatttaaatggagaggatct 327  Q
    ||||||||||| |||||||||||| || |||||||||||||    ||||||||||||||||    
T  38079812 tttatgtgtctttatctctccaaattgaaaaaatggagaaacgcataaatggagaggatct 38079872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 277
Target Start/End: Original strand, 54588829 - 54588921
Alignment:
Q  185 atttggagagatatagacacaaaaattcttgaaaataattaatgatagttagacttatttaatgatatgactcaccacctactttatgtgtct 277  Q
    ||||||||||||| | ||||||||| ||||  |||||||||||||| ||   ||||||||||| || | |||||| | ||| |||||||||||    
T  54588829 atttggagagataaaaacacaaaaaatcttataaataattaatgatggtagaacttatttaataatgtaactcacaatctattttatgtgtct 54588921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 267 - 326
Target Start/End: Original strand, 5763254 - 5763313
Alignment:
Q  267 tttatgtgtctatatctctccaaagtgtaaaaatggagaaaaatttaaatggagaggatc 326  Q
    ||||||||||| |||||||||||| || | ||||||||||| || |||||||||| ||||    
T  5763254 tttatgtgtctttatctctccaaattgaagaaatggagaaacatataaatggagatgatc 5763313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 267 - 326
Target Start/End: Complemental strand, 12153154 - 12153095
Alignment:
Q  267 tttatgtgtctatatctctccaaagtgtaaaaatggagaaaaatttaaatggagaggatc 326  Q
    ||||||||||| |||||||||||| || | ||||||||||| |  |||||||||||||||    
T  12153154 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggatc 12153095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 176 - 219
Target Start/End: Original strand, 26428593 - 26428636
Alignment:
Q  176 atttctaccatttggagagatatagacacaaaaattcttgaaaa 219  Q
    |||||||| ||||||||||||||||||||| ||||| |||||||    
T  26428593 atttctacaatttggagagatatagacacacaaatttttgaaaa 26428636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 267 - 326
Target Start/End: Original strand, 33247220 - 33247279
Alignment:
Q  267 tttatgtgtctatatctctccaaagtgtaaaaatggagaaaaatttaaatggagaggatc 326  Q
    ||||||||||| |||||||||||| || | ||||||||||| |  |||||||||||||||    
T  33247220 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggatc 33247279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 267 - 326
Target Start/End: Complemental strand, 56558262 - 56558203
Alignment:
Q  267 tttatgtgtctatatctctccaaagtgtaaaaatggagaaaaatttaaatggagaggatc 326  Q
    ||||||||||| |||||||||||| || | |||| |||||| || |||||||||||||||    
T  56558262 tttatgtgtctttatctctccaaattgaagaaatagagaaacatataaatggagaggatc 56558203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 219
Target Start/End: Original strand, 12153090 - 12153164
Alignment:
Q  145 gttaggatcctttccatttaaatttttgtctatttctaccatttggagagatatagacacaaaaattcttgaaaa 219  Q
    ||||||||||| ||||||||  | ||| || |||||| | ||||||||||||| ||||||| ||| |||||||||    
T  12153090 gttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaagacacataaaatcttgaaaa 12153164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 267 - 333
Target Start/End: Original strand, 19902010 - 19902076
Alignment:
Q  267 tttatgtgtctatatctctccaaagtgtaaaaatggagaaaaatttaaatggagaggatctcaaccc 333  Q
    ||||||||||| |||||||||||| || | |||| |||||| |  |||||||||||||||| |||||    
T  19902010 tttatgtgtctttatctctccaaattgaagaaatagagaaacacataaatggagaggatcttaaccc 19902076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 335
Target Start/End: Original strand, 12241500 - 12241568
Alignment:
Q  267 tttatgtgtctatatctctccaaagtgtaaaaatggagaaaaatttaaatggagaggatctcaaccctt 335  Q
    ||||||||||| |||||||||||| || | ||||||||||| |  |||||| ||||||||  |||||||    
T  12241500 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatgaagaggatcctaaccctt 12241568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 335
Target Start/End: Complemental strand, 52018766 - 52018698
Alignment:
Q  267 tttatgtgtctatatctctccaaagtgtaaaaatggagaaaaatttaaatggagaggatctcaaccctt 335  Q
    ||||||||| | |||||||||||| || | ||||||||||| |  |||||||||||||||  |||||||    
T  52018766 tttatgtgtttttatctctccaaattgaagaaatggagaaacacataaatggagaggatcctaaccctt 52018698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 176 - 279
Target Start/End: Complemental strand, 24413397 - 24413294
Alignment:
Q  176 atttctaccatttggagagatatagacacaaaaattcttgaaaataattaatgatagttagacttatttaatgatatgactcaccacctactttatgtgt 275  Q
    |||||| |||||| ||| ||||  |||||||||| |||||||||||||||||||| ||  |||  ||||||||||| ||| ||||| | | ||| |||||    
T  24413397 atttcttccattttgagggataaggacacaaaaaatcttgaaaataattaatgatggtgggacccatttaatgataggacccaccatccattttttgtgt 24413298  T
Q  276 ctat 279  Q
    ||||    
T  24413297 ctat 24413294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 251
Target Start/End: Complemental strand, 36700927 - 36700861
Alignment:
Q  185 atttggagagatatagacacaaaaattcttgaaaataattaatgatagttagacttatttaatgata 251  Q
    ||||||||||||| ||||||||||| | |||||||||||||||||| || | |  ||||||||||||    
T  36700927 atttggagagatacagacacaaaaaattttgaaaataattaatgatggtgaaatctatttaatgata 36700861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 251
Target Start/End: Complemental strand, 36717031 - 36716965
Alignment:
Q  185 atttggagagatatagacacaaaaattcttgaaaataattaatgatagttagacttatttaatgata 251  Q
    ||||||||||||| ||||||||||| | |||||||||||||||||| || | |  ||||||||||||    
T  36717031 atttggagagatacagacacaaaaaattttgaaaataattaatgatggtgaaatctatttaatgata 36716965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 267 - 326
Target Start/End: Original strand, 12381002 - 12381061
Alignment:
Q  267 tttatgtgtctatatctctccaaagtgtaaaaatggagaaaaatttaaatggagaggatc 326  Q
    ||||||||||| |||||||||||| || | ||||||||||| |  |||||||||||||||    
T  12381002 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggatc 12381061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 267 - 326
Target Start/End: Original strand, 12385069 - 12385128
Alignment:
Q  267 tttatgtgtctatatctctccaaagtgtaaaaatggagaaaaatttaaatggagaggatc 326  Q
    ||||||||||| |||||||||||| || | ||||||||||| |  |||||||||||||||    
T  12385069 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggatc 12385128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 267 - 326
Target Start/End: Complemental strand, 45978005 - 45977946
Alignment:
Q  267 tttatgtgtctatatctctccaaagtgtaaaaatggagaaaaatttaaatggagaggatc 326  Q
    ||||||||||| |||||||||||| || | ||||||||||| |  |||||||||||||||    
T  45978005 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggatc 45977946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 279
Target Start/End: Complemental strand, 1358489 - 1358404
Alignment:
Q  193 agatatagacacaaaaattcttgaaaataattaatgatagttagacttatttaatgatatgactcaccacctactttatgtgtctat 279  Q
    ||||||| ||||||||| |||| || |||||||||||| || |||||||||  |||||| || |||| ||||| ||| |||||||||    
T  1358489 agatataaacacaaaaaatcttaaatataattaatgatggtgagacttattcgatgatagga-tcacaacctattttttgtgtctat 1358404  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 219
Target Start/End: Complemental strand, 7841866 - 7841792
Alignment:
Q  145 gttaggatcctttccatttaaatttttgtctatttctaccatttggagagatatagacacaaaaattcttgaaaa 219  Q
    |||||||| || |||||||| || ||| || |||||| | ||||||||||||| ||||||| ||| |||||||||    
T  7841866 gttaggattctctccatttatatgtttttccatttcttcaatttggagagataaagacacataaaatcttgaaaa 7841792  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 267 - 333
Target Start/End: Complemental strand, 12151750 - 12151684
Alignment:
Q  267 tttatgtgtctatatctctccaaagtgtaaaaatggagaaaaatttaaatggagaggatctcaaccc 333  Q
    ||||||||||| |||||||||||| || | ||||||||||| |  ||||||| |||||||| |||||    
T  12151750 tttatgtgtctttatctctccaaattgaataaatggagaaacacataaatggggaggatcttaaccc 12151684  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 219
Target Start/End: Complemental strand, 12381066 - 12380992
Alignment:
Q  145 gttaggatcctttccatttaaatttttgtctatttctaccatttggagagatatagacacaaaaattcttgaaaa 219  Q
    ||||||||||| ||||||||  | ||| || |||||| | ||||||||||||| ||||||| ||| |||||||||    
T  12381066 gttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaagacacataaaatcttgaaaa 12380992  T

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Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 219
Target Start/End: Complemental strand, 12385133 - 12385059
Alignment:
Q  145 gttaggatcctttccatttaaatttttgtctatttctaccatttggagagatatagacacaaaaattcttgaaaa 219  Q
    ||||||||||| ||||||||  | ||| || |||||| | ||||||||||||| ||||||| ||| |||||||||    
T  12385133 gttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaagacacataaaatcttgaaaa 12385059  T

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Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 219
Target Start/End: Original strand, 45977941 - 45978015
Alignment:
Q  145 gttaggatcctttccatttaaatttttgtctatttctaccatttggagagatatagacacaaaaattcttgaaaa 219  Q
    ||||||||||| ||||||||  | ||| || |||||| | ||||||||||||| ||||||| ||| |||||||||    
T  45977941 gttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaagacacataaaatcttgaaaa 45978015  T

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Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 267 - 333
Target Start/End: Complemental strand, 50484369 - 50484303
Alignment:
Q  267 tttatgtgtctatatctctccaaagtgtaaaaatggagaaaaatttaaatggagaggatctcaaccc 333  Q
    ||||||||||| |||||||||||| |  | ||||||||||| |  |||||||||||||||| |||||    
T  50484369 tttatgtgtctttatctctccaaattaaagaaatggagaaacacataaatggagaggatcttaaccc 50484303  T

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Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 327
Target Start/End: Complemental strand, 30077784 - 30077607
Alignment:
Q  151 atcctttccatttaaatttttgtctatttctaccatttggagagatatagacacaaaaattcttgaaaataattaatgatagttagacttatttaatgat 250  Q
    ||||| |||||||| |  ||| ||||||| | |||||| |||| ||| ||||||| |||   |  ||||||||||||||||||  |||| | ||| ||||    
T  30077784 atcctctccatttataaatttctctatttgttccatttagagaaataaagacacataaaaagtaaaaaataattaatgatagtgggactcacttagtgat 30077685  T
Q  251 atgactcaccacctactttatgtgtctatatctctccaaagtgtaa-aaatggagaaaaatttaaatggagaggatct 327  Q
    |  || |||||| || ||| ||||||||| |||||||||| || || ||||| | |||  | ||||||||||||||||    
T  30077684 agaacccaccacttattttttgtgtctatctctctccaaattgcaataaatgaaaaaatttataaatggagaggatct 30077607  T

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Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 208
Target Start/End: Complemental strand, 18976427 - 18976395
Alignment:
Q  176 atttctaccatttggagagatatagacacaaaa 208  Q
    |||||||||||||||||||||||| ||||||||    
T  18976427 atttctaccatttggagagatataaacacaaaa 18976395  T

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Target: scaffold0012 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 267 - 326
Target Start/End: Complemental strand, 208046 - 207987
Alignment:
Q  267 tttatgtgtctatatctctccaaagtgtaaaaatggagaaaaatttaaatggagaggatc 326  Q
    ||||||||||| |||||||||||| || | ||||||||||| |  |||||||||||||||    
T  208046 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggatc 207987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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