View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_high_92 (Length: 348)
Name: NF3918_high_92
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_high_92 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 18 - 339
Target Start/End: Original strand, 36682637 - 36682952
Alignment:
| Q |
18 |
acttggtgactaggcaaagtttgtttgactcaaactattaggttattaatagtatatatggcctgctatataaagcaatctcattgtaatcat--ttatt |
115 |
Q |
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| T |
36682637 |
acttggtgactaggcaaagtttgtttgactcaaactattaggttattaatagtat----ggcctgctatataaagcaatctcattgtaatcataattatt |
36682732 |
T |
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| Q |
116 |
atttaactcccctnnnnnnnnnnnnnnnctaattctaatagattgatcattgaataatgaacttcaacaatgtgtctgaaattactttttactctaccct |
215 |
Q |
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| T |
36682733 |
atttaactcccctaaaaataaaaataaactaattctaatagattgatcattgaataatgaacttcaacaatgtgtctgaaattactttttactctaccct |
36682832 |
T |
|
| Q |
216 |
gaaactacacatgtaggttatttaacaatcaaaagggattcacatttaagtttgtaaaaattgaagaggaaaactattcaagacataaacataccagaac |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |
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| T |
36682833 |
gaaactacacatgtaggttatttaacaatcaaaagggattcacatttaagtttgtaaaaattgaagaggaaaactattgaagacataa----accagaac |
36682928 |
T |
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| Q |
316 |
tcatgcaaaataaaccagaataat |
339 |
Q |
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|||||||||||||| ||||||||| |
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| T |
36682929 |
tcatgcaaaataaatcagaataat |
36682952 |
T |
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