View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3918_high_96 (Length: 335)
Name: NF3918_high_96
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_high_96 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 18 - 319
Target Start/End: Complemental strand, 16325553 - 16325254
Alignment:
| Q |
18 |
aggagaaataaatagcccattccaaacttagcataccaaattagaattctagtgtaagcaagttgttcagaaaaatccatttttaaatttagtttggaat |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16325553 |
aggagaaataaatagcccattccaaacttagcataccaaattagaattctagtgtaagcaa-ttgttcagaaaaatccatttttaaatttagtttggaat |
16325455 |
T |
|
| Q |
118 |
aacatgtagtaagattttaattaccttttagtcaaatttcgaattatttggtccattttattgaaaaacagagggttaagacaacaatattaaaattcta |
217 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
16325454 |
aacatgtagtaagattttacttatcttttagtcaaatttcaaattatttggtccattctattgaaaaacagaggattaagacaacaatattaaaattcta |
16325355 |
T |
|
| Q |
218 |
atatggtattgataaagagtcgagacgacgctttattagaacctaagcataagctgcatttggaaaattcaataaccacatcaaaaccatacgcttcagt |
317 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
16325354 |
atatggtattgataaagagtcgagacaacgcttta-tagaacctaaccataagctgcatttggaaaattcaataaccacgtcgaaaccatacgcttcagt |
16325256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University