View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_high_99 (Length: 331)
Name: NF3918_high_99
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_high_99 |
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Alignment Details
Target: chr7 (Bit Score: 113; Significance: 3e-57; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 149 - 322
Target Start/End: Original strand, 19824068 - 19824248
Alignment:
| Q |
149 |
ttgatgtcttagaatcaattcttgatgaaaaaa-ccaaacatgtttgcaagggacaaaaacatgat---gagttttgatggnnnnnnnnta---taatta |
241 |
Q |
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| T |
19824068 |
ttgatgtcttataatcaattcttgatgaaaaaaaccaaatatgtttgcaagggacaaaaacatgatcatgagttttgatggaaaaaaaataaaataatta |
19824167 |
T |
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| Q |
242 |
gaggtttgttagagtctggagtgtcgaatgttccacactgagaagtggtgcttagctgatgagatattttcagtcctttgc |
322 |
Q |
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| T |
19824168 |
gaggtttgttagagtctggagtgtcgaatgttccacactgagaagtggtgcttagctgatgagatattttcagtcctttgc |
19824248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 52 - 120
Target Start/End: Original strand, 19824005 - 19824073
Alignment:
| Q |
52 |
cttgatgaaggggtttatgacatcaatgacacatctgcttatcttctaaccagctggtgttcattgatg |
120 |
Q |
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| T |
19824005 |
cttgatgaaggggtttatgacatcaatgacacatctgcttatcttctaaccagctggtgttcattgatg |
19824073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 104 - 160
Target Start/End: Original strand, 37645233 - 37645289
Alignment:
| Q |
104 |
gctggtgttcattgatgaaggggtcaaagttaactcatggattacttgatgtcttag |
160 |
Q |
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| T |
37645233 |
gctggtcttcattgatgaagggatcaaagttaactcctgggttagttgatgtcttag |
37645289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 137
Target Start/End: Original strand, 19827157 - 19827190
Alignment:
| Q |
104 |
gctggtgttcattgatgaaggggtcaaagttaac |
137 |
Q |
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| T |
19827157 |
gctggtcttcattgatgaaggggtcaaagttaac |
19827190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 159 - 208
Target Start/End: Original strand, 16159577 - 16159626
Alignment:
| Q |
159 |
agaatcaattcttgatgaaaaaaccaaacatgtttgcaagggacaaaaac |
208 |
Q |
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| T |
16159577 |
agaatcaattcttgatgaaaaaaccaaaaatgtttgcacgggacaaaaac |
16159626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 159 - 207
Target Start/End: Complemental strand, 24035708 - 24035660
Alignment:
| Q |
159 |
agaatcaattcttgatgaaaaaaccaaacatgtttgcaagggacaaaaa |
207 |
Q |
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| T |
24035708 |
agaatcgattcttgaagaaaaaaccaaacatgtttgcaagggacaaaaa |
24035660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 208
Target Start/End: Complemental strand, 4290601 - 4290569
Alignment:
| Q |
176 |
aaaaaaccaaacatgtttgcaagggacaaaaac |
208 |
Q |
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| T |
4290601 |
aaaaaaccaaacatgtttgcaagtgacaaaaac |
4290569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 159 - 208
Target Start/End: Complemental strand, 21223845 - 21223796
Alignment:
| Q |
159 |
agaatcaattcttgatgaaaaaaccaaacatgtttgcaagggacaaaaac |
208 |
Q |
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| T |
21223845 |
agaatcaattcttggtgaaataaccaaacatgtttacaagggacaaaaac |
21223796 |
T |
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